- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S3150.g17506.01.t
Possible name(s)
CDC27; TTC28
Gene model
Location
S3150 [8,948 / 10,988]
Amino acid sequence
Length: 679
>Phmamm.CG.MTP2014.S3150.g17506.01.p
MLALACEVRLKAYTSANAQVDWHPNVLPEENSRSQTTAITIVYILGLDDTVKMMLTALNL
QHTALQKLKISPEQQSDNIPKKDLTLLHKGFIFCALNRCEESLSCLNDLKKSEYFEAILE
HDENESCSVAQLHFVCVARNFLNEKRFGDLENFCSLNQDKKHASMTKCFWHYFKGEVFFS
RQCYRQALLQFENASHYPSAVYILAKAKCFIKLGLTEMALDCYKLALEYSDVPNRSKVLL
DAAKVSETDEASLFIKTAIENLRKENTSSDETVANWLSDILYDTENDEDFVQFLMDQMDL
REKILKKKEENNNLFSLAKCHNLLGQIKPSKENYTKIIDQLLTKQNNPNKKISAEDHNLL
AQCYQQLNKHKDAVKHFELEIVKLEKQKCFESIVEKRTNLANYLFLQHEDKQAKQQQMEL
LRFLENSFDAETDRELKFNLLFEIGHCYFNLQEYQKALDTFQNRTITRGYKISDSEYQTI
LSELHNLKHHFCLGKCFYQLKKYNDAINSFNQCFQYSESNNVKRAETNIALGFCFFKKNE
LEQALISFNNALGILSECVSSNYLTSAKYGRAMCYMAKEMYQVAMEDLHNAVKSFICETY
DFEKKSKKVDDFTESLFGSNCDIVRQKTYFDKHEYSLLKCFPVKVYPQLHDSIVCIGKCI
AIIFNQSNARNSRKRKFGS
Nucleotide sequence
Length: 2,040
>Phmamm.CG.MTP2014.S3150.g17506.01.t
ATGCTTGCCTTGGCATGTGAAGTTAGATTAAAAGCTTACACGTCAGCAAATGCCCAGGTT
GATTGGCATCCTAATGTTTTGCCTGAAGAAAATAGTAGGAGCCAAACCACTGCCATAACC
ATTGTATACATTCTTGGATTGGATGACACAGTTAAAATGATGCTAACTGCCTTGAACTTG
CAGCACACTGCTTTACAAAAATTAAAAATATCTCCCGAACAGCAAAGTGACAACATTCCC
AAAAAAGACTTAACTTTGTTACATAAAGGTTTCATTTTTTGTGCATTAAATAGGTGTGAA
GAATCTCTGTCCTGTCTAAATGATTTAAAAAAATCAGAGTATTTTGAAGCTATTTTGGAG
CATGATGAGAATGAATCATGTTCAGTGGCTCAACTGCACTTTGTGTGTGTTGCACGCAAT
TTCTTGAATGAAAAGAGATTTGGAGACCTAGAAAATTTTTGTTCATTAAACCAAGACAAA
AAACATGCATCAATGACCAAATGTTTCTGGCATTATTTTAAGGGTGAAGTCTTCTTCAGT
AGGCAATGCTACAGACAAGCGCTGCTACAATTTGAAAATGCTTCTCATTATCCAAGTGCA
GTGTATATATTAGCTAAGGCCAAGTGTTTTATCAAGCTAGGATTGACTGAAATGGCACTG
GATTGCTACAAATTAGCACTTGAATATTCAGATGTACCCAATCGTTCTAAAGTTTTGCTT
GATGCCGCCAAAGTTAGTGAAACAGATGAAGCTTCACTGTTCATAAAAACGGCTATTGAA
AATTTACGAAAGGAAAACACCAGCTCTGACGAAACAGTGGCTAATTGGTTATCTGACATT
TTGTATGACACAGAAAATGATGAGGATTTTGTGCAGTTTCTTATGGACCAGATGGACCTT
CGTGAAAAAATATTGAAAAAGAAAGAAGAAAACAATAACCTTTTCAGCCTGGCAAAATGT
CATAATCTACTTGGACAAATCAAACCATCCAAAGAAAATTACACAAAAATTATTGATCAA
CTACTTACCAAGCAGAATAATCCAAACAAAAAAATATCAGCTGAAGACCACAACCTGTTG
GCTCAATGCTACCAGCAGTTGAACAAACATAAAGATGCTGTTAAACACTTTGAACTTGAA
ATTGTTAAGTTAGAAAAACAAAAATGCTTTGAAAGCATTGTGGAGAAAAGGACAAACTTG
GCAAACTATTTGTTCCTTCAACATGAAGACAAACAGGCAAAGCAACAACAAATGGAATTG
TTAAGGTTTTTAGAAAACAGTTTTGATGCTGAGACTGACCGTGAGTTGAAATTTAATTTG
CTGTTTGAAATTGGTCACTGTTATTTTAACCTGCAAGAATATCAAAAAGCCTTGGATACA
TTTCAAAACCGAACCATTACACGAGGGTATAAAATTTCAGACTCAGAATATCAAACAATT
TTGTCTGAATTACACAATCTTAAACACCACTTTTGTCTTGGAAAATGCTTTTATCAGTTA
AAGAAGTATAACGATGCAATAAATAGTTTCAACCAATGTTTTCAATACAGTGAAAGCAAC
AATGTTAAACGAGCAGAGACAAATATTGCACTTGGTTTTTGCTTTTTTAAGAAGAATGAA
CTTGAACAAGCCTTAATCAGTTTTAACAATGCTTTAGGCATCTTGTCTGAATGTGTCAGC
AGCAATTACTTAACATCGGCAAAATATGGAAGGGCAATGTGCTACATGGCAAAAGAAATG
TACCAAGTTGCTATGGAGGATTTACACAATGCAGTTAAAAGTTTTATTTGTGAAACTTAC
GATTTTGAGAAAAAGTCCAAAAAAGTTGATGATTTTACTGAATCTTTATTTGGTTCCAAT
TGTGACATTGTTAGACAAAAAACATATTTTGATAAACATGAATACTCACTCCTGAAATGC
TTTCCGGTCAAAGTATATCCCCAACTACATGACTCTATTGTGTGCATAGGAAAATGTATT
GCAATTATTTTTAATCAATCAAATGCCAGAAACAGCAGAAAACGAAAATTCGGTAGTTGA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[170-277] 5.1E-6 - T[278-382] 3.1E-6 - T[383-522] 2.6E-11 - T[523-614] 5.1E-5 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[175-589] 1.04E-11 - T[486-593] 2.04E-14 |
| SMART |
TPR_repeat (IPR019734) - T[200-233] 7.5 - T[354-387] 12.0 - T[438-471] 26.0 - T[487-520] 0.0084 - T[525-558] 0.56 - T[565-600] 270.0 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[354-387] 5.458 - T[438-471] 6.874 - T[487-520] 8.319 - T[525-558] 7.405 |
| Pfam |
TPR_repeat (IPR019734) - T[441-463] 0.13 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[487-558] 11.888 |
| Protein Name | Identity | Bit Score | e-value |
|---|