- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'Moocci.CG.ELv1_2.S61...' >
- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S30.g01201.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S30 [85,455 / 92,525]
Amino acid sequence
Length: 315
>Phmamm.CG.MTP2014.S30.g01201.01.p
MQYTCHRTKNCEINKSTRSRCQFCRFQKCINAGMLRESVRNDRNKKRGKEKDMRNGSENG
SPTSPEEVTCPPEIENVVITVAKSHVDTFPNTSSLSQYKVNQPPSVEAIKSKGTDGRLWE
KFAELSTKSIVKIVEFAKGIPGFQDFTIADQITLLKCACLEVLFLRICSRFSPDNDSMTF
SDGLVLTRNQLKFAAFGPITDQVFSFAQSLHPLEADPTEIGLLSAICLICPDRPDLEEPD
KVEQLQETLLEGLKFYTRKRRPDSPQLFPKLIMKISDLRSISMRGADRVVSVKAEVAPGA
MPPLITEMLENEDDE
Nucleotide sequence
Length: 948
>Phmamm.CG.MTP2014.S30.g01201.01.t
ATGCAGTACACCTGTCATCGAACAAAGAACTGTGAGATCAACAAGTCTACACGAAGCAGG
TGTCAGTTCTGTCGATTCCAGAAATGCATTAATGCTGGAATGCTTCGTGAATCTGTAAGA
AACGATCGCAACAAGAAGCGAGGAAAGGAAAAAGACATGCGGAACGGAAGTGAGAACGGA
AGTCCTACGTCACCGGAGGAAGTGACGTGCCCACCCGAGATTGAAAATGTGGTGATCACT
GTTGCGAAATCCCACGTGGACACTTTTCCAAACACAAGCTCGCTGAGCCAATACAAAGTG
AACCAACCACCATCTGTCGAAGCAATCAAATCCAAGGGCACTGATGGTCGATTATGGGAA
AAATTCGCTGAGCTTTCAACAAAGTCAATTGTGAAAATTGTGGAGTTTGCCAAAGGAATT
CCAGGATTTCAGGACTTCACTATAGCTGACCAGATAACGCTGCTGAAATGCGCCTGCCTC
GAAGTTTTGTTTCTTCGGATTTGCTCACGTTTTTCGCCTGACAATGACTCGATGACCTTT
TCCGATGGTTTAGTGCTGACGCGCAATCAGTTGAAATTTGCTGCTTTTGGTCCGATCACA
GATCAGGTATTTTCGTTTGCCCAGTCTTTGCATCCACTGGAAGCTGACCCAACTGAAATT
GGTCTTCTCAGCGCAATCTGTCTCATTTGCCCAGATCGTCCTGATCTTGAAGAGCCGGAC
AAGGTCGAACAACTACAAGAAACTTTGCTGGAGGGTCTGAAGTTTTACACCCGCAAACGC
CGACCAGATTCCCCTCAACTTTTTCCAAAACTTATCATGAAGATTTCGGATCTAAGAAGC
ATTAGCATGAGAGGCGCTGACCGAGTAGTTTCAGTAAAGGCTGAAGTCGCACCAGGTGCA
ATGCCTCCTCTCATCACTGAAATGCTGGAGAATGAAGATGACGAATAA
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-37] 3.8E-4 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-41] 11.283 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-63] 4.5E-13 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[2-35] 8.8E-10 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[18-310] 2.1E-69 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[30-40] 5.0E-29 - T[125-146] 5.0E-29 - T[146-162] 5.0E-29 - T[213-228] 5.0E-29 - T[270-287] 5.0E-29 |
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[38-51] 1.6E-27 - T[168-192] 1.6E-27 - T[205-217] 1.6E-27 - T[235-256] 1.6E-27 - T[279-294] 1.6E-27 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[73-311] 54.48 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[121-289] 4.3E-24 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[124-282] 3.0E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 57.143 % | 361 | 1.56E-123 |
| RARG_HUMAN | 56.604 % | 335 | 3.35E-113 |
| RARA_HUMAN | 57.508 % | 353 | 1.88E-120 |