- Transcript 'Harore.CG.MTP2014.S8...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S305.g07005.01.t
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
S305 [65,738 / 69,567]
Amino acid sequence
Length: 519
>Phmamm.CG.MTP2014.S305.g07005.01.p
MSSAKSKQSINDITSSIVTSSRGDEVNSNSGVKMTLLEQQLWSKFHSYVNEMIVTKNGRR
MFPVLKTSISGLDPNAMYSIMLDFVAVDNNRWKYVNGEWVTGGKPEPHVSSCAYIHPDSP
NFGSHWMKQPIGFNRVKLTNKTTGNAQQIMLNSLHKYEPRIHVVKVGGPEAQKMIATHSF
PETQFIAVTAYQNEEVTSLKIKYNPFAKAFLDAKESRSDMDPMTYGDVSKSQISPQTPQM
NSWVLPNHEALPHQYPGPGGFHPHPYPPASVQQINPSPIMTPNPNVYPRHSGKERHTSHK
NHRHSPYAHPTYHPVQRTSPSGSYTPTSYQDLNLTQPSINGASPADCVYTFPSAAEPWPT
PQPLDGTLSGEHFQFDVPNNFDQFQPNFEANPYEFQHFNYPAPVEGQATSVYDVPSSQYS
NMTSYAPDVAYTSEYLPTSDVSSSAAPLNQNFLPQLMTQQNETNITVTSPDGNHVMMSSL
YDTPSPPVIELSQNSPLNEVAFDPCKRSPQWSPLTPPSL
Nucleotide sequence
Length: 1,560
>Phmamm.CG.MTP2014.S305.g07005.01.t
ATGAGTTCCGCAAAATCGAAGCAGTCTATCAATGATATTACGTCATCGATCGTGACGTCA
TCGCGTGGTGATGAAGTAAATTCCAACAGTGGAGTAAAGATGACTCTTTTGGAACAGCAA
CTGTGGTCAAAGTTCCATAGTTACGTCAACGAGATGATTGTGACGAAAAACGGAAGGAGA
ATGTTTCCGGTTCTGAAAACCTCGATATCCGGCTTAGACCCGAACGCCATGTATTCCATC
ATGCTTGACTTCGTCGCAGTCGACAATAACAGGTGGAAGTATGTAAATGGGGAGTGGGTA
ACAGGAGGAAAACCCGAACCTCACGTTTCGTCGTGCGCTTACATTCACCCCGATTCGCCC
AATTTCGGCTCTCATTGGATGAAACAACCGATCGGATTCAACCGTGTGAAACTGACCAAT
AAGACGACCGGAAACGCACAGCAAATCATGTTAAACTCCCTGCACAAGTACGAACCCCGC
ATACACGTTGTGAAAGTTGGTGGGCCTGAAGCACAGAAGATGATTGCGACGCATTCATTC
CCTGAAACCCAGTTCATCGCCGTCACTGCTTATCAGAATGAAGAGGTGACTTCATTAAAA
ATCAAATACAACCCGTTTGCGAAAGCTTTTCTCGATGCTAAAGAAAGTCGGAGTGACATG
GATCCAATGACGTACGGTGACGTAAGCAAAAGTCAGATTTCACCGCAAACTCCACAAATG
AACTCATGGGTGTTACCCAACCACGAAGCTTTACCCCACCAATACCCCGGCCCAGGGGGA
TTCCACCCGCACCCCTACCCACCAGCGTCGGTACAACAAATAAACCCATCACCCATCATG
ACCCCAAACCCCAATGTTTACCCCCGGCATTCAGGCAAAGAGCGACACACGAGCCATAAA
AATCATAGGCACTCGCCGTACGCTCATCCGACTTACCATCCAGTGCAGAGAACCTCCCCA
TCAGGTTCGTACACGCCTACATCATACCAAGACCTCAACCTAACCCAGCCATCGATCAAC
GGTGCATCTCCAGCCGATTGCGTTTACACCTTTCCTTCTGCGGCCGAGCCGTGGCCAACA
CCTCAGCCGCTAGACGGCACACTGAGCGGAGAACATTTTCAATTCGACGTCCCAAACAAT
TTCGATCAATTCCAGCCAAATTTCGAAGCGAATCCCTACGAGTTTCAGCATTTTAATTAT
CCTGCACCTGTTGAAGGCCAAGCTACTTCGGTGTATGACGTTCCCAGCAGTCAGTACAGC
AATATGACGTCATACGCGCCTGACGTAGCGTATACGTCAGAGTATTTACCAACTAGTGAT
GTTTCAAGCAGTGCAGCGCCCTTGAATCAAAATTTTCTTCCACAACTAATGACGCAACAA
AACGAAACAAATATTACTGTTACGTCACCGGATGGCAACCACGTGATGATGTCGTCACTC
TATGACACGCCTTCACCTCCTGTGATTGAGTTGAGTCAAAACTCACCACTCAACGAAGTT
GCATTTGATCCTTGCAAGAGAAGTCCCCAGTGGTCACCTTTGACCCCACCTTCATTGTGA
| PANTHER |
TF_T-box (IPR001699) - T[14-518] 4.8E-136 |
| Gene3D |
T-box_sf (IPR036960) - T[31-217] 3.3E-80 |
| SMART |
TF_T-box (IPR001699) - T[31-217] 1.4E-113 |
| CDD |
TF_T-box (IPR001699) - T[31-216] 7.54938E-109 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[32-212] 3.11E-75 |
| Pfam |
TF_T-box (IPR001699) - T[35-212] 1.6E-72 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[36-212] 73.261 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[41-60] . - T[115-133] . |
| PRINTS |
TF_T-box (IPR001699) - T[49-73] 9.2E-43 - T[114-127] 9.2E-43 - T[131-140] 9.2E-43 - T[150-164] 9.2E-43 - T[183-196] 9.2E-43 - T[204-212] 9.2E-43 |
| PRINTS |
TF_Brachyury (IPR002070) - T[94-114] 3.4E-20 - T[155-172] 3.4E-20 - T[208-218] 3.4E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 54.062 % | 313 | 5.32E-102 |
| TBX19_HUMAN | 50.825 % | 283 | 1.8E-90 |
| TBX6_HUMAN | 41.767 % | 199 | 2.24E-58 |