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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2.g00073.02.t

Possible name(s)

EXOSC4; EXOSC5; EXOSC6

Gene model

Phmamm.CG.MTP2014.S2.g00073

Location

S2 [215,254 / 216,085]

Sequences

Amino acid sequence

Length: 276

>Phmamm.CG.MTP2014.S2.g00073.02.p
MATDSRRLAVPQSSLDPKSLCPAKVERLLNDEEQRLDGRYSSESRGIYLQCGTVSQAKGS
CYCELGNTKVVCSVYGPKDVEHYEDFQMEGKIKCEFKYAPFSCSKHRGHIPDLSEAEISD
VILQALTASVRLQCYPKSLIEVFIIVLENDGSAVSASITAASLALADAGIEQYDIVTSAS
VRVYGNDNFLEDPTSVEEYRPQDFDSESGGDLNHGLVTVALLPTLNQVCAVLSSGHLECD
VLVETIQMCTSLAQNLYTAARKCLLSSIRSVDQNNA

Nucleotide sequence

Length: 831

>Phmamm.CG.MTP2014.S2.g00073.02.t
ATGGCTACAGATTCTCGTAGATTAGCTGTTCCTCAGTCCAGTCTTGATCCCAAGTCGTTA
TGCCCTGCAAAAGTAGAAAGGCTTTTGAACGATGAAGAACAAAGATTAGATGGCAGGTAT
TCGTCTGAATCTCGTGGCATTTACTTACAATGTGGAACAGTTTCCCAAGCCAAAGGCTCT
TGCTACTGTGAACTTGGTAATACAAAAGTTGTATGTTCTGTATACGGACCGAAAGATGTA
GAACATTATGAAGACTTCCAAATGGAAGGAAAAATAAAATGCGAGTTCAAATATGCACCC
TTCTCATGTAGCAAACACCGTGGACACATTCCAGATTTGAGTGAAGCTGAAATTTCCGAT
GTTATTTTACAAGCATTGACTGCATCAGTAAGGTTACAATGCTATCCAAAGTCTCTTATT
GAAGTGTTTATCATAGTTTTGGAAAATGATGGTTCTGCAGTATCTGCATCTATAACTGCA
GCTTCTCTAGCTCTTGCCGATGCTGGAATTGAACAGTACGACATAGTTACAAGTGCATCG
GTTCGCGTTTATGGAAATGACAATTTTCTTGAAGACCCTACTTCGGTCGAGGAATACAGG
CCACAGGATTTTGATTCTGAATCCGGCGGAGATTTAAATCATGGACTTGTAACAGTTGCC
CTTCTTCCAACACTAAATCAAGTTTGTGCAGTACTGTCTAGTGGCCATTTGGAATGTGAT
GTTCTCGTCGAGACCATTCAAATGTGCACTAGCTTGGCTCAAAATTTATACACTGCTGCT
AGAAAATGTCTGTTGTCTTCCATAAGAAGTGTTGACCAAAATAATGCTTGA

InterProScan

SUPERFAMILY
Ribosomal_S5_D2-typ_fold (IPR020568) - T[23-199] 7.09E-37
Pfam
ExoRNase_PH_dom1 (IPR001247) - T[43-171] 7.5E-34
SUPERFAMILY
ExoRNase_PH_dom2_sf (IPR036345) - T[173-270] 1.11E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EXOS4_HUMAN 30.081 % 105 2.6E-27
EXOS6_HUMAN 33.214 % 112 1.0E-29