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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2992.g17336.01.t

Possible name(s)

AP002748.4; BBS1

Gene model

Phmamm.CG.MTP2014.S2992.g17336

Location

S2992 [3,133 / 4,939]

Sequences

Amino acid sequence

Length: 601

>Phmamm.CG.MTP2014.S2992.g17336.01.p
MVVFCSTEVEKMDLDKADENVNWLKAHFDPVAGVYSFSSCIALADLNGDGDHKLVIADLG
TGKYNMMIKVLKGTSVVQENTLLDLPTGVVSVYMDMTEPRTPGLVVASGSGLFVYKNMRP
YYKYNVEALTVLPEEQQLWDQSKVGNVDVATLADALNSLKNEYSSSMLTSQTSHFLKLSS
QEEAKQFVEDYKNVPLKRETVITCITTMKKSMAEDDAISCIVLGLENKEIHIVDCEAYTV
LHKFTVHGVPVIINVSGLFDVDFRMFVACRNGCVYTLKKDSDNARVCLDLNSQVVGMERI
HKCLVVAMMDRTFASFTTKGRQLWSLEMPADILCTTIMDHKAKGFKAVMVGLSNNEVHIY
RDKNLVDTVKLNDRPQALCFGRYGREDSTLVAVLASGALQVLILKRTAEYADHSLHRGPP
SSQYMKLNIPKKTQLFVDQTVRERENGIEMFQNFQNDLQMMRVNVAEMYLKGLQSSMTPL
SDDPNVPLKLSATVQGIGPMFQLILTIENTALPSPSDAKLLTDLKVVFKYLDKVYTVSPG
VLSLPALVPDIPYKFSIQVECIASDQPAQDTITAFIVKPDNTKPVVTANISMPASEGVVV
V

Nucleotide sequence

Length: 1,806

>Phmamm.CG.MTP2014.S2992.g17336.01.t
ATGGTTGTTTTTTGTAGCACAGAGGTAGAAAAGATGGATTTGGATAAGGCAGATGAAAAT
GTAAACTGGCTTAAGGCACATTTTGATCCTGTTGCTGGAGTGTATTCATTTTCTTCATGT
ATTGCACTTGCTGATTTAAATGGTGATGGGGACCATAAGCTAGTTATTGCAGATTTGGGT
ACTGGAAAGTACAACATGATGATCAAGGTGCTCAAGGGTACATCTGTCGTTCAGGAAAAC
ACTTTGCTGGATCTCCCTACTGGTGTGGTTAGTGTTTACATGGACATGACTGAACCAAGA
ACCCCTGGATTAGTTGTTGCTTCAGGTTCTGGACTGTTTGTGTACAAAAACATGCGACCA
TATTACAAGTACAATGTGGAAGCATTGACAGTTCTGCCTGAGGAACAACAGCTTTGGGAT
CAAAGTAAAGTTGGCAATGTGGATGTTGCAACTCTTGCAGATGCTTTAAATAGTTTAAAA
AATGAATACTCTTCTTCTATGTTAACATCTCAAACTAGTCATTTTTTAAAACTGAGTAGT
CAAGAAGAGGCCAAGCAGTTTGTTGAAGACTACAAGAATGTTCCACTAAAACGAGAAACA
GTAATTACATGCATTACTACAATGAAGAAATCCATGGCCGAAGATGATGCTATATCATGC
ATTGTGCTTGGGTTGGAAAACAAAGAAATTCACATTGTTGATTGTGAGGCATATACAGTT
TTACATAAATTTACTGTTCATGGTGTACCTGTAATAATCAATGTCTCTGGTTTGTTTGAT
GTTGATTTCCGTATGTTTGTAGCTTGTCGTAATGGCTGTGTTTATACCTTAAAAAAGGAT
TCTGACAATGCTCGAGTTTGCCTTGACCTGAATTCACAAGTTGTTGGCATGGAAAGAATA
CACAAATGTCTTGTTGTAGCAATGATGGATAGAACATTCGCAAGTTTTACAACAAAAGGA
AGACAACTTTGGAGTCTGGAAATGCCAGCTGATATTTTGTGTACCACCATAATGGATCAC
AAAGCAAAAGGATTTAAAGCAGTAATGGTGGGCCTAAGCAACAATGAAGTTCACATTTAT
AGAGATAAAAACCTTGTGGATACAGTGAAGCTTAATGATAGGCCACAAGCACTTTGCTTT
GGTCGTTACGGTCGCGAGGACAGCACCCTTGTTGCTGTTCTGGCATCAGGTGCATTGCAG
GTGCTGATATTAAAACGTACAGCAGAATATGCAGATCATTCTCTACACCGGGGCCCACCA
TCATCTCAATATATGAAACTAAATATTCCAAAGAAAACACAACTTTTTGTTGATCAGACG
GTAAGAGAGAGAGAGAATGGAATTGAAATGTTTCAAAATTTCCAAAATGACCTTCAAATG
ATGAGGGTTAATGTGGCTGAGATGTATTTGAAAGGTTTACAATCAAGTATGACCCCACTG
TCAGATGATCCAAATGTGCCCTTGAAGTTGTCTGCCACTGTGCAAGGCATTGGTCCTATG
TTTCAATTGATACTGACCATTGAAAACACAGCATTGCCATCTCCAAGTGATGCAAAACTT
TTGACTGATTTGAAAGTGGTTTTTAAGTATTTGGATAAGGTTTATACAGTTTCTCCTGGT
GTTTTAAGTTTGCCAGCTTTGGTGCCAGATATTCCATACAAGTTTTCCATCCAGGTGGAA
TGCATTGCCTCAGACCAACCAGCACAGGACACTATTACCGCTTTCATTGTAAAACCTGAC
AACACCAAACCTGTCGTAACTGCCAACATATCCATGCCTGCATCAGAAGGAGTTGTTGTT
GTTTGA

InterProScan

PANTHER
BBS1 (IPR028784) - T[15-600] 1.5E-223
Pfam
BBS1_N (IPR032728) - T[23-278] 2.1E-95
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[215-417] 1.28E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BBS1_HUMAN 44.007 % 529 0