Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S297.g06886.02.t

Possible name(s)

PLOD1; PLOD2; PLOD3

Gene model

Phmamm.CG.MTP2014.S297.g06886

Location

S297 [135,714 / 143,515]

Sequences

Amino acid sequence

Length: 542

>Phmamm.CG.MTP2014.S297.g06886.02.p
MCGEPLDYACRNNYGIKCQEKDRDPMKCELELVEQETTSRVKNVKYHTFPSVIHGNGPSK
VHLNYFSNYMPDGWHSDTGCRKCEQDLLDLSSLEQEDSYPLVQLSIFIEDTMPFFSEFLQ
RIEKLSYPKSRIALFIHNNEQTLERVVAQFLLRHRSKFNSVKVVAPHEQVSELEARQMAI
ERCFAVNCDYQFSVNADVQLTNPDTLNFLITKNKKVIAPLVRRPGKLWSNFWGALNIDGY
YARSEDYLAIVNMERRGIWNIPFMNSVYLIKVEVLHQLIDEVGKPFSDGDLDPDMALCSH
LRNEGVFIYLSNEYEFGHLVVPDLKVDSEVHPDLWQIKANAKDWEDKYIHPGFWNATLSE
TKVTQPCPDVYMFPLFTPAMADAIVELMEFHGKWSTGNNEDERLTGGYENVPTIDIHMNQ
VGYEKQWLHLLATYPLKVVQKVYPGYDSKAHSIMMFVVRYKPSEQPFLRPHHDSSTWTMN
VALNTHGQDYEGGGCRFLRYNCSATQIPKGYALIHPGRLTHYHEGLQTTKGTRYIAVSFV
DP

Nucleotide sequence

Length: 1,629

>Phmamm.CG.MTP2014.S297.g06886.02.t
ATGTGTGGGGAACCATTAGATTATGCTTGCAGAAACAATTATGGTATAAAGTGCCAGGAA
AAAGATAGGGACCCAATGAAATGCGAACTGGAGTTGGTTGAACAAGAGACAACTAGTCGT
GTCAAAAATGTCAAGTATCATACATTTCCCAGTGTCATCCACGGCAATGGACCATCAAAG
GTGCATCTTAACTATTTCTCAAACTACATGCCAGATGGTTGGCATAGTGATACTGGGTGC
AGAAAATGTGAACAAGATCTGTTGGACCTGTCCAGTCTGGAGCAGGAGGACAGTTACCCA
CTTGTTCAACTTTCCATTTTTATTGAAGATACCATGCCATTCTTTTCTGAGTTTCTTCAA
AGAATTGAAAAACTATCGTACCCTAAATCGAGAATTGCCTTGTTTATACACAACAATGAA
CAAACACTGGAAAGAGTGGTTGCCCAATTTCTTCTTCGGCACAGATCGAAATTTAATTCA
GTAAAAGTTGTTGCTCCCCATGAACAAGTTTCTGAATTGGAAGCCAGGCAAATGGCCATA
GAACGTTGCTTTGCTGTCAATTGTGACTACCAATTTAGCGTAAATGCTGATGTACAGCTT
ACCAACCCTGACACACTTAACTTTCTCATTACCAAGAACAAAAAGGTTATAGCTCCATTA
GTCAGAAGACCTGGAAAACTGTGGAGCAACTTCTGGGGTGCTTTAAACATTGATGGCTAC
TATGCACGATCAGAAGATTATCTTGCTATTGTTAACATGGAACGAAGGGGCATTTGGAAC
ATACCTTTTATGAACTCAGTTTATCTTATAAAAGTTGAAGTTTTGCACCAACTAATAGAC
GAAGTCGGTAAACCTTTTAGTGACGGAGATCTCGACCCTGACATGGCTTTATGCTCTCAT
TTACGTAACGAGGGAGTCTTCATCTACTTAAGCAATGAGTATGAGTTTGGGCATCTGGTG
GTTCCAGATTTGAAGGTGGACTCAGAAGTGCATCCTGATTTATGGCAGATCAAAGCCAAT
GCAAAGGATTGGGAAGACAAATACATTCACCCTGGATTCTGGAACGCAACGTTAAGTGAA
ACGAAAGTCACTCAACCTTGCCCTGACGTGTATATGTTTCCGCTCTTCACACCAGCAATG
GCGGACGCTATTGTTGAGCTCATGGAGTTTCATGGAAAATGGTCGACCGGAAACAATGAG
GACGAAAGATTAACTGGTGGATACGAAAATGTACCAACCATCGACATCCATATGAACCAA
GTCGGTTACGAAAAACAGTGGCTGCATTTGTTGGCCACCTATCCACTTAAAGTCGTACAA
AAAGTTTATCCCGGCTACGACTCAAAGGCCCACTCGATTATGATGTTTGTGGTTCGGTAC
AAACCCAGTGAGCAACCGTTTTTGCGTCCACACCACGATTCAAGCACCTGGACAATGAAC
GTGGCCCTCAACACCCATGGACAGGACTATGAGGGCGGAGGCTGCAGGTTTTTGCGCTAT
AATTGCTCCGCAACTCAGATTCCTAAGGGTTACGCCTTGATCCACCCAGGCCGTCTCACG
CACTACCATGAAGGTTTACAAACAACCAAGGGCACTCGATACATTGCCGTGTCTTTCGTT
GACCCTTGA

InterProScan

SUPERFAMILY	Nucleotide-diphossugar_trans (IPR029044) - T[116-344] 1.09E-8
SMART	Pro_4_hyd_alph (IPR006620) - T[368-541] 9.7E-17
ProSiteProfiles	Oxoglu/Fe-dep_dioxygenase (IPR005123) - T[449-542] 10.764

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
PLOD3_HUMAN	52.778 %	553
PLOD1_HUMAN	51.984 %	553
PLOD2_HUMAN	50.291 %	528