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TRANSCRIPT CARD

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  1. Region 'REG00000873' > 
  2. Transcript 'KH2012:KH.C2.175.v2....' > 
  3. EST 'BW407972' > 
  4. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S272.g06489.01.t

Possible name(s)

SOX14; SOX2; SOX21

Gene model

Phmamm.CG.MTP2014.S272.g06489

Location

S272 [94,095 / 96,707]

Sequences

Amino acid sequence

Length: 415

>Phmamm.CG.MTP2014.S272.g06489.01.p
MLAVDSAQAASWMPVPYPSSGMVPSNPHLPPPPMASSGVPSSMTGDIKPYITDSMGIAGQ
MTHLSPPVSHHHNPGQNQNNNNSSANSKAAQEQRVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGAEWKTLSDTDKRPFIDEAKRLRALHMKEHPDYKYRPRRKNKPILKKDKFQ
MGPGVGMMQGSNPAGLPGSNRSHISPGPIDYSQLNSYYNHQMIGSEPQMSPYGSSAPHSF
PSHPGIANGAAASQRYEPMSMYYPAYSAAPAALPSMSSLTSQHNGYAQAPYSVGTSPAYS
LAQPHTPTNSIHSITGSHHSSSGVHSPANTSPGASSVTSAPPSSGGSPSHQSMLPPAGSH
HALHQMYVQHMNENQNAALANDPESPGMRLQSTSHYQAATSVGHVPMAMHMPQSM

Nucleotide sequence

Length: 1,248

>Phmamm.CG.MTP2014.S272.g06489.01.t
ATGTTAGCTGTCGACTCAGCACAAGCAGCAAGCTGGATGCCCGTGCCTTATCCTTCAAGC
GGCATGGTCCCAAGTAATCCTCATTTGCCACCACCGCCAATGGCTTCATCAGGAGTTCCA
TCCAGTATGACAGGAGACATCAAACCATACATCACGGATTCGATGGGAATTGCCGGACAA
ATGACGCATCTTTCCCCGCCGGTTTCGCATCACCACAACCCGGGCCAGAATCAGAACAAC
AACAATTCGTCGGCAAACTCCAAAGCCGCACAGGAGCAAAGAGTCAAGCGGCCAATGAAC
GCCTTCATGGTTTGGTCAAGAGGACAACGCCGTAAGATGGCACAAGAAAACCCAAAAATG
CACAACTCCGAAATCTCAAAACGCCTCGGAGCCGAATGGAAAACCCTTTCCGATACCGAC
AAACGCCCATTCATCGATGAAGCCAAACGCCTTCGCGCTTTGCACATGAAGGAGCACCCC
GACTACAAGTACCGACCCAGACGCAAAAACAAGCCAATCCTTAAGAAGGACAAATTCCAG
ATGGGCCCCGGCGTTGGAATGATGCAAGGCAGCAACCCAGCAGGTCTTCCAGGATCCAAC
CGAAGCCACATTTCCCCAGGCCCAATTGATTATTCACAGCTTAACAGCTACTACAACCAC
CAGATGATCGGCTCCGAACCTCAAATGAGTCCCTACGGTAGCAGCGCACCACACTCGTTC
CCTTCACACCCAGGAATTGCAAACGGTGCAGCAGCTTCTCAACGTTACGAACCGATGTCG
ATGTACTACCCAGCTTACAGTGCCGCGCCAGCAGCTCTTCCAAGTATGAGTTCACTCACT
AGCCAGCACAACGGCTATGCCCAGGCACCTTACTCTGTGGGAACATCGCCAGCATACAGC
CTGGCACAACCGCACACCCCAACCAACTCTATTCATAGCATCACCGGATCTCACCATAGT
AGCAGCGGTGTGCACTCGCCAGCCAACACCAGCCCCGGTGCATCATCCGTTACTTCAGCG
CCGCCCTCATCAGGAGGCAGCCCAAGTCACCAGTCAATGCTGCCTCCAGCTGGAAGCCAT
CACGCCCTCCACCAGATGTACGTTCAACATATGAATGAGAATCAAAACGCTGCTTTGGCA
AATGATCCCGAGTCGCCAGGAATGCGTCTTCAGTCGACAAGCCACTACCAGGCCGCCACG
TCGGTTGGTCATGTCCCGATGGCAATGCACATGCCACAAAGCATGTAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[86-167] 3.93E-28
Gene3D
HMG_box_dom_sf (IPR036910) - T[92-171] 2.3E-31
SMART
HMG_box_dom (IPR009071) - T[94-164] 1.4E-28
Pfam
HMG_box_dom (IPR009071) - T[95-163] 2.8E-27
ProSiteProfiles
HMG_box_dom (IPR009071) - T[95-163] 23.051
Pfam
SOX_fam (IPR022097) - T[164-230] 1.3E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 85.87 % 177 2.35E-52
SOX21_HUMAN 88.235 % 167 5.98E-49
SOX14_HUMAN 75.962 % 167 2.28E-49