- Transcript 'KH2012:KH.C12.129.v1...' >
- Region 'REG00000911' >
- Transcript 'Boleac.CG.SB_v3.S249...' >
- Transcript 'KH2012:KH.L37.39.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S272.g06489.01.t
Possible name(s)
SOX14; SOX2; SOX21
Gene model
Location
S272 [94,095 / 96,707]
Amino acid sequence
Length: 415
>Phmamm.CG.MTP2014.S272.g06489.01.p
MLAVDSAQAASWMPVPYPSSGMVPSNPHLPPPPMASSGVPSSMTGDIKPYITDSMGIAGQ
MTHLSPPVSHHHNPGQNQNNNNSSANSKAAQEQRVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGAEWKTLSDTDKRPFIDEAKRLRALHMKEHPDYKYRPRRKNKPILKKDKFQ
MGPGVGMMQGSNPAGLPGSNRSHISPGPIDYSQLNSYYNHQMIGSEPQMSPYGSSAPHSF
PSHPGIANGAAASQRYEPMSMYYPAYSAAPAALPSMSSLTSQHNGYAQAPYSVGTSPAYS
LAQPHTPTNSIHSITGSHHSSSGVHSPANTSPGASSVTSAPPSSGGSPSHQSMLPPAGSH
HALHQMYVQHMNENQNAALANDPESPGMRLQSTSHYQAATSVGHVPMAMHMPQSM
Nucleotide sequence
Length: 1,248
>Phmamm.CG.MTP2014.S272.g06489.01.t
ATGTTAGCTGTCGACTCAGCACAAGCAGCAAGCTGGATGCCCGTGCCTTATCCTTCAAGC
GGCATGGTCCCAAGTAATCCTCATTTGCCACCACCGCCAATGGCTTCATCAGGAGTTCCA
TCCAGTATGACAGGAGACATCAAACCATACATCACGGATTCGATGGGAATTGCCGGACAA
ATGACGCATCTTTCCCCGCCGGTTTCGCATCACCACAACCCGGGCCAGAATCAGAACAAC
AACAATTCGTCGGCAAACTCCAAAGCCGCACAGGAGCAAAGAGTCAAGCGGCCAATGAAC
GCCTTCATGGTTTGGTCAAGAGGACAACGCCGTAAGATGGCACAAGAAAACCCAAAAATG
CACAACTCCGAAATCTCAAAACGCCTCGGAGCCGAATGGAAAACCCTTTCCGATACCGAC
AAACGCCCATTCATCGATGAAGCCAAACGCCTTCGCGCTTTGCACATGAAGGAGCACCCC
GACTACAAGTACCGACCCAGACGCAAAAACAAGCCAATCCTTAAGAAGGACAAATTCCAG
ATGGGCCCCGGCGTTGGAATGATGCAAGGCAGCAACCCAGCAGGTCTTCCAGGATCCAAC
CGAAGCCACATTTCCCCAGGCCCAATTGATTATTCACAGCTTAACAGCTACTACAACCAC
CAGATGATCGGCTCCGAACCTCAAATGAGTCCCTACGGTAGCAGCGCACCACACTCGTTC
CCTTCACACCCAGGAATTGCAAACGGTGCAGCAGCTTCTCAACGTTACGAACCGATGTCG
ATGTACTACCCAGCTTACAGTGCCGCGCCAGCAGCTCTTCCAAGTATGAGTTCACTCACT
AGCCAGCACAACGGCTATGCCCAGGCACCTTACTCTGTGGGAACATCGCCAGCATACAGC
CTGGCACAACCGCACACCCCAACCAACTCTATTCATAGCATCACCGGATCTCACCATAGT
AGCAGCGGTGTGCACTCGCCAGCCAACACCAGCCCCGGTGCATCATCCGTTACTTCAGCG
CCGCCCTCATCAGGAGGCAGCCCAAGTCACCAGTCAATGCTGCCTCCAGCTGGAAGCCAT
CACGCCCTCCACCAGATGTACGTTCAACATATGAATGAGAATCAAAACGCTGCTTTGGCA
AATGATCCCGAGTCGCCAGGAATGCGTCTTCAGTCGACAAGCCACTACCAGGCCGCCACG
TCGGTTGGTCATGTCCCGATGGCAATGCACATGCCACAAAGCATGTAA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[86-167] 3.93E-28 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[92-171] 2.3E-31 |
| SMART |
HMG_box_dom (IPR009071) - T[94-164] 1.4E-28 |
| Pfam |
HMG_box_dom (IPR009071) - T[95-163] 2.8E-27 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[95-163] 23.051 |
| Pfam |
SOX_fam (IPR022097) - T[164-230] 1.3E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX2_HUMAN | 85.87 % | 177 | 2.35E-52 |
| SOX21_HUMAN | 88.235 % | 167 | 5.98E-49 |
| SOX14_HUMAN | 75.962 % | 167 | 2.28E-49 |