- Transcript 'KH2012:KH.L4.29.v2.C...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S268.g06416.02.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
S268 [118,294 / 121,568]
Amino acid sequence
Length: 154
>Phmamm.CG.MTP2014.S268.g06416.02.p
GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE
ASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ
IFVKTLTGKTITLEVEASDSIENVKSKIQDKEGV
Nucleotide sequence
Length: 1,799
>Phmamm.CG.MTP2014.S268.g06416.02.t
AGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACG
CACCCTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG
TGGTGGAATGCAGATCTTTGTCAAAACATTGACTGGCAAAACCATCACTCTTGAAGTAGA
AGCATCTGACAGTATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGTATCCCACC
AGATCAGCAACGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGAGTGA
CTACAATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAATGCA
GATCTTTGTCAAAACATTGACTGGCAAAACCATTACTCTTGAAGTAGAAGCATCTGACAG
CATTGAAAATGTGAAATCGAAGATTCAAGACAAGGAAGGTGTGTAACAAAAGCCTAATCA
ACAGAACATTACTTTACAGCAAACCACATAGTGTTTTTTGTTCATTTTTGTTTTGTTTTT
CGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGG
ACGCACCCTGAGCGATTACAACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGCGTCT
TCGTGGCGGAATTTAAGTAGCTAAACCTGTTTTTCAAGACAATGGCGACTAACTTCTACC
ATAATGAATCTAAGAAGTTTTCTGTCTGGTCTTGGAATCCATGTGCTTGGTGCCTGTTGT
AATATGTGCAAATAAATCTTCTCAGAGTATTGAAATGGTGCATTGATATTTGAGAAGTGT
ATTTATGCTTGAAAATTTGGACACTTGGTGGATACAGCTATCCGAATTGTGCTCAAAAAT
TTACCCTGGAGCAGGAACTTGGCCGAATGGTCTGGCGCGCCTGACCCATATACATACATA
AAAAAACTTGATCGGGATTCGTCCCCGGGAGTGTCCTGGGTTCGAACCCCGTGAAAAAAA
ATGAAAAAAAAATAGTTAATACGAAACACGACTCCAGCGTTCCATAATATAAACGATTTG
ACGCAACCGTGAATTTTATATTGTGTAGTAGACAGATCTTGCTTTTGTCCGTATTTTTTT
CTGTCTAGACGCTGGTTTGTTCCACGCGTTTGGTTAAGAAAGAGTGTTGCGTACTTGTTC
AATTTTTGCACTGGGTTGGTTTTCTTTTGTCCAAATTTAATCCTGCTGAAGTGTGTCCCC
GAATGACCCAGCGATTCATCCAAAGGCCTAAAAACGTAATTTTAAGAAAACGACTTTGTT
GACTAAAGTATATGATCTAGGAGTTTCATACTTTGTTGGTTGGCATTGTAAAGCATTCTT
AATAATTTCGTACCTTTTAACTGGATCCACCCCTTAAACCCCGAAATATACGTTTTTAGC
TTTACAGGGGCCAACGATTAGTTTGCTTATGTTTTAACTGCGACATGCTTTCATCCAAAT
GTGTTACTGGTGTCGTTTTGCAAGCTGGGGAAATAACTCGTTATTCAGCTCACATGGGAC
GAGCCTTGTTTCTAGTTCCTTGCGCTTAAATATCACTGACGGCCCGAAAAAAGGTGAAGT
GCGATGAACACACTGCTTTACGCCCAGCAATTTTTTTGTTAGCCGGTTCTATCACAAAAG
TCATGTTTTTCAGCTGGTTCTGTTACAAAAAGTACATTGACAGTAACCAGCAATGCTAAC
CGGTTCGCTGATCTCATAAAAATTCATGAAACGGTTCTTTTGAACCGGCTGAATCCCAC
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-42] 20.109 - T[43-118] 30.343 - T[119-154] 11.529 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[1-40] 5.4E-17 - T[45-116] 1.7E-33 - T[121-154] 3.9E-9 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[1-42] 1.31E-17 - T[42-118] 2.49E-34 - T[118-154] 4.6E-10 |
| SMART |
Ubiquitin_dom (IPR000626) - T[1-38] 2.2 - T[43-114] 6.3E-35 |
| PRINTS |
Ubiquitin (IPR019956) - T[53-73] 3.3E-38 - T[74-94] 3.3E-38 - T[95-116] 3.3E-38 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[69-94] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 96.104 % | 153 | 7.07E-49 |
| UBB_HUMAN | 96.104 % | 298 | 7.79E-105 |
| UBC_HUMAN | 96.104 % | 298 | 4.09E-99 |