- Transcript 'KH2012:KH.C1.523.v2....' >
- Transcript 'KH2012:KH.C3.911.v1....' >
- Clone 'cima819765' >
- Transcript 'KH2012:KH.C2.437.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S268.g06416.01.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
S268 [117,396 / 120,445]
Amino acid sequence
Length: 685
>Phmamm.CG.MTP2014.S268.g06416.01.p
MQIFVKTLTGKTITLEVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEASDSIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVETLTGKTITLEVEASASIENVKAKIQGKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVETLTGKTITLEVEASASIE
NVKAKIQGKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVETL
TGKTITLEVEASASIENVKAKIQGKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEASDSIENVKSKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGI
Nucleotide sequence
Length: 2,058
>Phmamm.CG.MTP2014.S268.g06416.01.t
ATGCAGATCTTTGTGAAAACACTTACTGGAAAGACTATAACCTTGGAAGTTGAGGCTTCT
GACAGCATTGAAAATGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCTGATCAG
CAACGTTTGATATTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGAGTGACTACAAT
ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTT
GTCAAAACATTGACTGGCAAAACCATCACTCTTGAAGTAGAAGCATCTGACAGCATTGAA
AATGTAAAAGCAAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAGCAGCGTTTAATC
TTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGAGTGACTACAATATCCAGAAAGAG
TCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTTGTCAAAACATTG
ACTGGCAAAACCATCACTCTTGAAGTAGAAGCATCTGACAGCATTGAAAATGTAAAAGCA
AAAATTCAAGACAAGGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAG
CAGCTGGAAGATGGACGCACCCTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCAC
TTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTTGTCAAAACATTGACTGGCAAAACC
ATCACTCTTGAAGTAGAAGCATCTGACAGTATTGAAAATGTAAAAGCAAAAATTCAAGAT
AAGGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAGCAGCTGGAAGAT
GGACGCACCCTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGT
CTTCGTGGTGGAATGCAGATCTTTGTCAAAACATTGACTGGCAAAACCATCACTCTTGAA
GTAGAAGCATCTGACAGCATCGAAAATGTAAAATCAAAGATTCAAGACAAAGAAGGTATT
CCACCAGATCAACAACGTTTAATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTG
AGTGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGA
ATGCAGATCTTTGTTGAAACATTGACTGGCAAAACCATCACTCTTGAAGTAGAAGCATCT
GCCAGCATTGAAAATGTAAAAGCAAAGATTCAAGGCAAGGAAGGTATCCCACCAGATCAG
CAACGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGAGTGACTACAAT
ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTT
GTTGAAACATTGACTGGCAAAACCATCACTCTTGAAGTAGAAGCATCTGCCAGCATTGAA
AATGTAAAAGCAAAGATTCAAGGCAAGGAAGGTATCCCACCAGATCAGCAACGTTTGATC
TTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGAGTGACTACAATATCCAGAAAGAG
TCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTTGTTGAAACATTG
ACTGGCAAAACCATCACTCTTGAAGTAGAAGCATCTGCCAGCATTGAAAATGTAAAAGCA
AAGATTCAAGGCAAGGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCCGGCAAG
CAGCTGGAAGATGGGCGCACCCTGAGTGACTACAATATCCAGAAAGAGTCCACTCTTCAC
TTGGTGTTGCGTCTTCGTGGTGGAATGCAGATCTTTGTCAAAACATTGACTGGCAAAACC
ATTACTCTTGAAGTAGAAGCATCTGACAGCATTGAAAATGTGAAATCGAAGATTCAAGAC
AAGGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGAT
GGACGCACCCTGAGCGATTACAACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGCGT
CTTCGTGGCGGAATTTAA
| SMART |
Ubiquitin_dom (IPR000626) - T[1-72] 6.3E-35 - T[77-148] 6.3E-35 - T[153-224] 6.3E-35 - T[229-300] 6.3E-35 - T[305-376] 1.5E-34 - T[381-452] 1.6E-32 - T[457-528] 1.6E-32 - T[533-604] 1.6E-32 - T[609-680] 1.5E-34 |
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-76] 30.343 - T[77-152] 30.343 - T[153-228] 30.343 - T[229-304] 30.343 - T[305-380] 30.3 - T[381-456] 29.058 - T[457-532] 29.058 - T[533-608] 29.058 - T[609-684] 30.3 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[1-76] 1.29E-32 - T[76-152] 4.02E-33 - T[152-228] 4.02E-33 - T[227-304] 2.96E-33 - T[304-380] 5.92E-33 - T[379-456] 2.33E-31 - T[456-532] 4.44E-31 - T[532-608] 4.44E-31 - T[608-684] 7.19E-33 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[3-74] 2.4E-32 - T[79-150] 2.4E-32 - T[155-226] 2.4E-32 - T[231-302] 2.4E-32 - T[307-378] 5.9E-32 - T[383-454] 5.0E-30 - T[459-530] 5.0E-30 - T[535-606] 5.0E-30 - T[611-682] 5.9E-32 |
| PRINTS |
Ubiquitin (IPR019956) - T[11-31] 1.4E-36 - T[32-52] 1.4E-36 - T[53-74] 1.4E-36 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] . - T[255-280] . - T[331-356] . - T[635-660] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 96.104 % | 154 | 4.35E-44 |
| UBB_HUMAN | 96.943 % | 444 | 7.13E-154 |
| UBC_HUMAN | 95.62 % | 1299 | 0 |