- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S261.g06294.01.t
Possible name(s)
CSMD1; CSMD3; SVEP1
Gene model
Location
S261 [64,022 / 71,359]
Amino acid sequence
Length: 699
>Phmamm.CG.MTP2014.S261.g06294.01.p
MRRVKVLEPTGAMEPNETTDAAGASNSTEPTSNVPEEDPYSHIDQTSSSTHDSFYSVEIN
DQGQKQKGTPVKWLCLYFTIWQIVLLIVIIVALFFGVYGFYVKPDYMAKLQPDKPTVVSD
CGQLPLSNVTTRLINCSKPELPDNSHFLEELSNNYSYTLGDEIMYECNEGYRLEGEERVL
LCARNAKWRQVGQCRPIGYDFSYISMFSACPSPAQVTNGAQHTPVKCGYSVGDAINFTCF
SGYTLRGKMRTICNTSGMWDAPVPTCEAIPVAPGVGMRIATAKCPYNVGDTVVFECEEGY
ELHGSAKVHCNESGFWNNTMPSCTLLAAVTCLPPNGTIKGNYSPQNMLYDVGNQVNYSCE
SGYAVEGFYMLTCMANGTWNYDTPQCTVIETLSCVNGDWTFFFLPFRSNREGVFATLHEF
CRSYPDMCPEELPSSVEVVYFHEQEQVMPYRTRNQIVHFDPQIGLYCLHAEQIDGRPCER
YAVRFCLPHSTKEPSCSRNWTNYFDQDEPSGTGDYELMVNLTSQQSVCQNYPTAIDIRLS
TTDEDYRNRNRVVVLVGAQFWCRDIDEPSFGRCDNYKIRFCCEEIQCPTNSWTPFFNLDE
PGGQGDVEMIIDVKREMPNEMCSGNVLAIDARHESNEDWGYSRSFRSVHLDVNIGFWCIN
AEQPFGMDCYDYKVRFCCDNEVITDSGVLPGLNSNVAER
Nucleotide sequence
Length: 2,100
>Phmamm.CG.MTP2014.S261.g06294.01.t
ATGAGAAGAGTAAAGGTATTGGAACCAACTGGAGCGATGGAACCTAATGAGACAACAGAT
GCTGCAGGGGCTTCAAATTCTACGGAGCCGACGTCAAACGTTCCAGAAGAAGACCCATAC
AGCCATATCGACCAAACGTCTTCCTCCACTCACGACTCATTTTATAGCGTTGAGATAAAC
GACCAAGGGCAAAAACAAAAAGGAACACCGGTAAAATGGCTTTGCCTGTATTTCACCATT
TGGCAAATCGTTCTACTTATTGTGATCATTGTGGCTCTGTTCTTTGGAGTATACGGCTTT
TATGTTAAACCTGATTACATGGCAAAGTTACAACCTGATAAACCAACAGTTGTTTCAGAC
TGTGGGCAGTTACCACTGTCTAATGTCACGACTCGACTTATCAACTGTTCTAAGCCCGAG
CTTCCAGACAACTCACATTTTTTGGAAGAGCTAAGCAACAATTATAGTTACACACTCGGT
GATGAAATAATGTACGAGTGCAACGAGGGTTACAGACTCGAAGGAGAAGAAAGAGTTTTG
TTGTGTGCACGAAACGCTAAGTGGCGTCAAGTAGGACAATGTCGACCTATAGGATATGAC
TTCTCATACATATCAATGTTTTCAGCTTGCCCTTCACCCGCGCAAGTGACAAACGGCGCA
CAACACACACCAGTAAAATGCGGGTATAGCGTTGGTGATGCAATCAATTTCACGTGCTTC
TCTGGTTACACACTGCGCGGTAAAATGCGTACAATTTGTAATACATCCGGAATGTGGGAC
GCCCCAGTTCCAACATGTGAAGCAATTCCAGTTGCACCAGGAGTCGGCATGAGAATTGCA
ACGGCAAAATGCCCCTACAATGTCGGGGATACTGTAGTGTTCGAATGCGAGGAAGGCTAC
GAGCTTCATGGATCAGCTAAAGTACATTGCAACGAATCGGGTTTTTGGAACAACACAATG
CCAAGCTGCACCCTTCTAGCAGCCGTTACATGTCTTCCACCAAACGGTACAATCAAGGGA
AATTATTCTCCGCAAAATATGCTTTATGATGTTGGCAATCAAGTCAACTATTCGTGCGAA
AGCGGATATGCCGTGGAAGGATTTTATATGCTAACCTGTATGGCAAATGGGACATGGAAC
TACGACACACCCCAGTGCACTGTAATAGAAACTCTGAGCTGCGTCAACGGCGACTGGACG
TTCTTCTTCTTGCCGTTCAGATCGAACAGAGAGGGAGTCTTTGCCACTTTACACGAGTTC
TGTCGTTCTTACCCAGACATGTGCCCTGAAGAACTGCCTAGCTCTGTTGAAGTTGTGTAT
TTCCACGAGCAGGAACAAGTAATGCCGTATCGTACCAGAAATCAAATTGTACACTTCGAT
CCTCAGATTGGTCTCTATTGTCTTCATGCCGAGCAGATTGACGGACGACCGTGCGAGCGC
TATGCAGTCCGTTTTTGTTTGCCTCATTCAACAAAGGAACCGTCCTGTAGTCGGAATTGG
ACAAACTACTTTGATCAAGACGAACCGTCTGGCACAGGCGACTATGAACTTATGGTTAAT
CTAACTAGTCAACAGTCAGTTTGTCAAAACTACCCAACCGCTATCGACATTCGGTTGTCG
ACTACTGATGAGGACTATAGGAACAGAAACCGCGTGGTGGTGTTGGTTGGCGCACAGTTT
TGGTGCCGAGATATAGATGAACCATCATTCGGAAGGTGCGACAACTACAAGATTCGTTTC
TGCTGCGAAGAGATCCAATGCCCAACAAATAGCTGGACTCCATTTTTTAACTTGGACGAA
CCGGGCGGTCAAGGAGATGTGGAGATGATTATCGATGTGAAACGAGAAATGCCGAACGAA
ATGTGCTCGGGAAATGTCCTAGCGATAGATGCCAGACATGAATCAAACGAGGACTGGGGT
TATTCACGCAGTTTTCGCTCCGTGCACCTCGACGTTAACATTGGGTTCTGGTGTATTAAC
GCTGAACAACCCTTCGGGATGGATTGCTACGACTACAAAGTTCGCTTTTGTTGCGACAAC
GAAGTGATAACTGACAGCGGAGTACTTCCGGGGTTAAATTCTAATGTGGCCGAACGATAA
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[134-196] 10.157 - T[208-268] 12.798 - T[269-325] 9.898 - T[329-388] 10.871 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[135-197] 2.23E-9 - T[210-268] 4.85E-13 - T[281-326] 9.7E-12 - T[329-387] 9.44E-12 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[136-194] 1.3E-6 - T[210-266] 1.7E-11 - T[269-323] 1.6E-8 - T[331-386] 1.4E-6 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[136-190] 3.1E-7 - T[210-266] 7.6E-8 - T[281-323] 7.2E-11 - T[331-386] 1.7E-8 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[136-188] 8.88481E-6 - T[210-267] 9.40554E-12 - T[266-323] 1.92032E-11 - T[333-386] 2.99476E-8 |
| Pfam |
WxxW_domain (IPR025155) - T[410-486] 3.6E-5 - T[500-582] 7.4E-12 - T[592-678] 1.9E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SVEP1_HUMAN | 28.623 % | 112 | 3.11E-25 |
| CSMD3_HUMAN | 26.797 % | 109 | 2.07E-24 |
| CSMD1_HUMAN | 28.409 % | 108 | 3.77E-24 |
