- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S245.g06059.02.t
Possible name(s)
HOXA10; HOXC10; HOXD10
Gene model
Location
S245 [61,086 / 64,814]
Amino acid sequence
Length: 466
>Phmamm.CG.MTP2014.S245.g06059.02.p
MSTPLTDKDPNSHSQSNFCVYDSRLCPTSAEKSNIPAFQNHLKRVDEVSSLDYVDPSPRS
GFSAVAYQEKKNQSGLDASDKNNPFIMSNLYDTGGSNGGYRPNLFRDHQVTSENFLPPIH
AVPSHPIVTSPEKYYPEEGVTGTNVDSQQEQQNHLLENQKSREASTPDRNPLIPATSVFQ
AALDANKTTPVPTFPVSSILSDLKTAPTSTQHNGWGVGAGIEEASSDLRKSLSSYPQEDV
MKSEKIDSPFSNDQTSVSPFGADGKGDLGSTDESDPTKNWLTASGRKKRVPYTKFQLLEL
EKEFHYNQYLSRERRLEVAKAVKLTDRQVKIWFQNRRMKWKKERREERMRESVPHEQLAG
HMTGGPPPGMYHPGMQAHYSNTAAALAAAAGFSPLNHHPHHPFNSAPAMIPDTMTSHYGY
PAPPHIATASRHHPQAVNQMAAAAAADFLYGGMSRDSTIPLGCMYS
Nucleotide sequence
Length: 1,401
>Phmamm.CG.MTP2014.S245.g06059.02.t
ATGAGCACTCCACTGACTGACAAAGACCCCAATTCGCACAGCCAAAGCAACTTTTGTGTG
TACGACAGTCGACTTTGTCCAACTTCAGCAGAAAAATCGAACATTCCTGCTTTTCAAAAT
CACCTAAAACGTGTAGACGAGGTATCTTCACTTGACTACGTTGACCCAAGCCCTAGATCT
GGCTTTTCTGCAGTTGCTTACCAAGAGAAAAAGAATCAAAGTGGACTGGACGCATCAGAC
AAGAACAATCCATTCATTATGAGCAACTTATACGATACTGGAGGTTCAAATGGAGGGTAT
AGGCCAAATCTATTCCGCGATCATCAAGTAACAAGTGAAAATTTCCTCCCTCCAATTCAT
GCTGTACCCTCCCATCCCATTGTTACATCACCAGAGAAGTACTACCCCGAAGAAGGAGTA
ACTGGTACTAACGTAGACTCCCAACAGGAGCAACAGAATCACTTGTTGGAAAATCAAAAA
TCCAGAGAAGCATCAACGCCTGATCGAAACCCGTTGATTCCAGCAACGTCTGTGTTTCAA
GCAGCGCTTGACGCCAACAAGACAACACCTGTCCCAACTTTTCCGGTTTCATCCATTCTT
TCCGACCTTAAAACGGCTCCGACATCGACACAGCATAATGGCTGGGGGGTTGGCGCTGGA
ATCGAGGAAGCTTCTTCCGACTTGAGAAAGAGTTTGTCTTCTTATCCACAAGAAGACGTG
ATGAAGTCTGAGAAAATTGACTCTCCCTTTTCAAACGATCAAACGTCCGTGTCTCCGTTT
GGAGCGGATGGAAAAGGAGATTTAGGATCAACTGACGAAAGCGACCCAACAAAGAATTGG
CTGACAGCCAGTGGGCGCAAGAAGCGCGTGCCATACACAAAGTTCCAGCTCCTCGAACTG
GAAAAAGAGTTTCATTACAACCAATATTTATCTAGGGAACGAAGATTGGAAGTTGCCAAG
GCAGTTAAGCTCACAGACCGGCAGGTAAAAATCTGGTTCCAGAACCGAAGGATGAAGTGG
AAGAAAGAGCGGCGCGAAGAGAGAATGAGAGAGTCTGTTCCGCATGAACAACTCGCAGGT
CACATGACCGGAGGCCCGCCCCCTGGCATGTACCATCCAGGCATGCAGGCTCATTATTCT
AACACGGCAGCGGCCTTAGCAGCAGCGGCAGGTTTTTCCCCGCTTAACCACCACCCGCAC
CATCCATTCAACTCTGCTCCTGCAATGATACCAGATACGATGACGTCACACTACGGTTAC
CCGGCACCCCCTCATATAGCGACCGCCTCGCGTCATCACCCTCAAGCTGTCAATCAAATG
GCAGCGGCGGCTGCGGCCGATTTCTTGTACGGTGGCATGTCACGTGACAGTACAATTCCT
TTAGGCTGCATGTACAGCTGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[274-345] 1.54E-25 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[283-343] 21.313 |
| SMART |
Homeobox_dom (IPR001356) - T[285-347] 7.8E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[286-342] 1.18403E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[286-342] 1.2E-20 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[307-318] 2.7E-7 - T[322-332] 2.7E-7 - T[332-341] 2.7E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[318-341] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD10_HUMAN | 76.623 % | 126 | 1.67E-32 |
| HXC10_HUMAN | 75 % | 122 | 3.63E-31 |
| HXA10_HUMAN | 50.327 % | 123 | 5.89E-31 |
