- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S245.g06059.01.t
Possible name(s)
HOXA10; HOXC10; HOXD10
Gene model
Location
S245 [60,598 / 64,824]
Amino acid sequence
Length: 469
>Phmamm.CG.MTP2014.S245.g06059.01.p
IDTMSTPLTDKDPNSHSQSNFCVYDSRLCPTSAEKSNIPAFQNHLKRVDEVSSLDYVDPS
PRSGFSAVAYQEKKNQSGLDASDKNNPFIMSNLYDTGGSNGGYRPNLFRDHQVTSENFLP
PIHAVPSHPIVTSPEKYYPEEGVTGTNVDSQQEQQNHLLENQKSREASTPDRNPLIPATS
VFQAALDANKTTPVPTFPVSSILSDLKTAPTSTQHNGWGVGAGIEEASSDLRKSLSSYPQ
EDVMKSEKIDSPFSNDQTSVSPFGADGKGDLGSTDESDPTKNWLTASGRKKRVPYTKFQL
LELEKEFHYNQYLSRERRLEVAKAVKLTDRQVKIWFQNRRMKWKKERREERMRESVPHEQ
LAGHMTGGPPPGMYHPGMQAHYSNTAAALAAAAGFSPLNHHPHHPFNSAPAMIPDTMTSH
YGYPAPPHIATASRHHPQAVNQMAAAAAADFLYGGMSRDSTIPLGCMYS
Nucleotide sequence
Length: 1,899
>Phmamm.CG.MTP2014.S245.g06059.01.t
AATAGATACAATGAGCACTCCACTGACTGACAAAGACCCCAATTCGCACAGCCAAAGCAA
CTTTTGTGTGTACGACAGTCGACTTTGTCCAACTTCAGCAGAAAAATCGAACATTCCTGC
TTTTCAAAATCACCTAAAACGTGTAGACGAGGTATCTTCACTTGACTACGTTGACCCAAG
CCCTAGATCTGGCTTTTCTGCAGTTGCTTACCAAGAGAAAAAGAATCAAAGTGGACTGGA
CGCATCAGACAAGAACAATCCATTCATTATGAGCAACTTATACGATACTGGAGGTTCAAA
TGGAGGGTATAGGCCAAATCTATTCCGCGATCATCAAGTAACAAGTGAAAATTTCCTCCC
TCCAATTCATGCTGTACCCTCCCATCCCATTGTTACATCACCAGAGAAGTACTACCCCGA
AGAAGGAGTAACTGGTACTAACGTAGACTCCCAACAGGAGCAACAGAATCACTTGTTGGA
AAATCAAAAATCCAGAGAAGCATCAACGCCTGATCGAAACCCGTTGATTCCAGCAACGTC
TGTGTTTCAAGCAGCGCTTGACGCCAACAAGACAACACCTGTCCCAACTTTTCCGGTTTC
ATCCATTCTTTCCGACCTTAAAACGGCTCCGACATCGACACAGCATAATGGCTGGGGGGT
TGGCGCTGGAATCGAGGAAGCTTCTTCCGACTTGAGAAAGAGTTTGTCTTCTTATCCACA
AGAAGACGTGATGAAGTCTGAGAAAATTGACTCTCCCTTTTCAAACGATCAAACGTCCGT
GTCTCCGTTTGGAGCGGATGGAAAAGGAGATTTAGGATCAACTGACGAAAGCGACCCAAC
AAAGAATTGGCTGACAGCCAGTGGGCGCAAGAAGCGCGTGCCATACACAAAGTTCCAGCT
CCTCGAACTGGAAAAAGAGTTTCATTACAACCAATATTTATCTAGGGAACGAAGATTGGA
AGTTGCCAAGGCAGTTAAGCTCACAGACCGGCAGGTAAAAATCTGGTTCCAGAACCGAAG
GATGAAGTGGAAGAAAGAGCGGCGCGAAGAGAGAATGAGAGAGTCTGTTCCGCATGAACA
ACTCGCAGGTCACATGACCGGAGGCCCGCCCCCTGGCATGTACCATCCAGGCATGCAGGC
TCATTATTCTAACACGGCAGCGGCCTTAGCAGCAGCGGCAGGTTTTTCCCCGCTTAACCA
CCACCCGCACCATCCATTCAACTCTGCTCCTGCAATGATACCAGATACGATGACGTCACA
CTACGGTTACCCGGCACCCCCTCATATAGCGACCGCCTCGCGTCATCACCCTCAAGCTGT
CAATCAAATGGCAGCGGCGGCTGCGGCCGATTTCTTGTACGGTGGCATGTCACGTGACAG
TACAATTCCTTTAGGCTGCATGTACAGCTGAGTCGAGTTACTGGATATGTGGGGTTGGCA
TTGAAGTATTTTTATCTTGGCGAGCAATTGGTAAGATGCAGCTCATGAGTTGCCAGTATG
ATGTTGAGTGCCTTTCCAAAGCATACTCGATTGTTTTAAGACTAAAAAATTGCTTTGCAA
GACAAAATTGGAATCCGCCAATCGCTGCGCGTTTTAACGTTACGTATTTATCCCTAGCCG
ATGCACTCTGTAATTCTTTGCAATCTTCTGTCTACCATTGGACTACCTAACTCATTCCAA
TTGATAATTTGTCATCTCCGTTGCTTTTTATCGCCGCCCAACGACCTGGCTCATCTTGCC
AGCAATCCGCGCAGTGTCGCTGTTTGAAATCGTTATTTTGCTTTTTGCGTTTGTCAGTGT
TCTTCGGTCGTCGGTGTAATTTTGCTACCTTTTTATCATTGTATGTTTCTTGCATGTGCG
CTCAGACGACCTGATGGGTGTAAAAATACTAAAACGATA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[277-348] 1.58E-25 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[286-346] 21.313 |
| SMART |
Homeobox_dom (IPR001356) - T[288-350] 7.8E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[289-345] 1.2E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[289-345] 1.20885E-25 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[310-321] 2.7E-7 - T[325-335] 2.7E-7 - T[335-344] 2.7E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[321-344] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD10_HUMAN | 76.623 % | 125 | 1.83E-32 |
| HXC10_HUMAN | 75 % | 122 | 3.46E-31 |
| HXA10_HUMAN | 50.327 % | 123 | 6.56E-31 |
