- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S23.g00966.01.t
Possible name(s)
EDC4
Gene model
Location
S23 [359,457 / 372,703]
Amino acid sequence
Length: 1,119
>Phmamm.CG.MTP2014.S23.g00966.01.p
MIHIEAETTGTSSESSTYRVVWIPCVNFDSKGSSIDEGGNSFGDSTKNDDSDTQKLLALS
YGNIAEVWDLDSAFVVAKSNEKVQRSQLPQVFVTFDDHQADISDCELSPIGNVLATACYD
GYVKFWQIDIEDTAPPAVYWRFLLTGCDRNSELKLWCAISWDCLQVLYVMQMQNVQDETA
QVASVAQFQLKSPLLSVAFVDAKLCKFKNVPNGVEEIVEKAKVLDESFDEEEDEHKSQDE
TEEPTDVKKLDGVLIKLLAIQSKSLQSLDVRFISNESGANEGGISHDTLSTYNTISDDIK
DTVSLSSADENLFQPSKSEDLPEQEPVVSVNGSLSDLIASHSFNLMESHEYKPDFQEERK
DSNHDDTPTSPEASIPLHSLPHSSTQEKSVAPDLTRSVSPSPQQPPVLLTPDAFMAPMKS
PNNPVQSTNTSFTAVTPYSNREDSYYQPSQDLLLGSMSRNPLSNMVLSPSTVASEVPPMM
IPPEADDPATPPSSPVLPRASSSPARADPLPVARTRSVKSPDLISSTSTQDGDQNKELND
LASNNQPSLSHSHSSLLSMGFAASASGSGSHVSSAPMDSFPPILMQTSSGGQTGTSWPKA
PDVTMSRSMSSRSPPGGSMQINLEPSVQQEIPPQQVDEVQQPIEPRPALDVQELVRILTE
LRHQQRDLLNDHQRELQTMTKKQSQVQKQNDTSLKRSEQQGDRLEKSLKSVSENQRRMLN
DMKAMQTGVTEATANKIGRVIKTEIKQSVLPGLAGSLEPIKEQLSQSVVQKLTATDHVMK
ENIAKLVKSKEMVDSIAASTAKSLHGQIVSSLPEILFNAVVPPVERSSQAMFQQLAETYN
RGMQELVAKMEKQLQYRLKPEQDRLQNLIKESFDATSQLQAASKRLSSDVANVLQKQIPA
EVEKSLTRCEERITNSVLEAVKKQQQSAFAEQTKAIGDVVRGIVTATLDDKLAASGDSST
LAPGTSPVAGALGSRPQSRANILDQQQQILKLLQQGNVNTAFQTALTASDLNLVMYVCET
VDPSVVFGVTPCPLQQPILLSLIQQLSSDLTTKTEIKWKYLQEAVMNLDRRHQVTQEYMH
SVLSALVQKLQTCAQGPLETPSLAKDLKMLSMAAQSLMK
Nucleotide sequence
Length: 3,360
>Phmamm.CG.MTP2014.S23.g00966.01.t
ATGATCCATATTGAAGCAGAAACAACAGGTACTTCTTCTGAGTCAAGTACATACAGAGTT
GTATGGATTCCCTGTGTGAACTTCGACAGCAAGGGTAGTAGCATAGATGAAGGTGGAAAT
TCTTTCGGCGACTCGACAAAAAATGATGACAGTGATACACAAAAACTTCTTGCCTTGTCA
TATGGAAATATAGCAGAAGTTTGGGATCTAGACAGTGCCTTTGTTGTTGCCAAATCTAAT
GAAAAAGTTCAACGTTCTCAGCTTCCACAAGTGTTTGTGACGTTCGATGACCATCAAGCA
GATATTAGTGACTGTGAACTTTCACCCATTGGAAATGTTCTAGCCACTGCATGCTATGAT
GGATATGTAAAATTTTGGCAGATCGATATTGAAGACACTGCTCCACCAGCTGTGTATTGG
AGGTTTCTGCTGACCGGCTGTGACAGAAACAGTGAATTGAAACTTTGGTGTGCAATTTCC
TGGGATTGTTTGCAGGTCTTGTATGTGATGCAAATGCAAAATGTACAAGATGAAACAGCA
CAAGTTGCATCAGTGGCACAATTTCAACTCAAATCACCTCTACTGAGTGTAGCCTTTGTT
GATGCCAAACTATGCAAGTTCAAGAATGTTCCCAATGGTGTAGAAGAAATTGTTGAAAAG
GCAAAAGTTCTTGATGAATCATTTGATGAGGAAGAAGATGAACATAAATCACAAGATGAA
ACAGAAGAACCCACAGATGTGAAGAAATTGGATGGAGTGTTGATCAAGCTATTGGCAATT
CAATCAAAGAGTTTGCAAAGCTTGGATGTTCGATTTATCTCAAATGAGAGTGGTGCAAAT
GAAGGTGGCATCAGTCACGACACTTTAAGCACCTACAACACCATTTCTGATGATATAAAG
GACACTGTAAGTTTGAGCAGCGCTGATGAGAATCTTTTCCAACCAAGCAAATCTGAAGAT
CTGCCCGAGCAGGAACCAGTTGTCAGTGTTAATGGATCACTCAGTGACCTGATTGCTTCA
CATTCTTTTAACTTAATGGAATCACACGAATACAAGCCAGATTTCCAAGAGGAGCGTAAA
GATTCAAACCATGATGATACACCGACATCACCAGAAGCTTCAATTCCTCTTCATTCTCTT
CCTCACTCATCAACACAGGAAAAGTCAGTTGCTCCTGATCTTACTCGATCTGTGTCCCCC
TCTCCTCAGCAACCTCCAGTTCTACTCACTCCTGATGCATTTATGGCTCCTATGAAAAGT
CCAAACAATCCTGTACAATCAACAAACACCAGTTTTACTGCAGTCACTCCTTACAGCAAC
AGGGAAGATTCTTATTACCAACCCAGCCAAGATCTTCTACTTGGCTCCATGTCGAGAAAC
CCTTTATCCAACATGGTCCTAAGCCCATCAACAGTTGCATCCGAAGTTCCTCCCATGATG
ATTCCTCCTGAAGCAGATGATCCAGCTACTCCTCCTTCTTCCCCTGTCCTCCCGCGTGCC
TCCTCATCACCAGCAAGAGCCGATCCTCTTCCTGTAGCCAGGACTCGATCAGTGAAGTCT
CCTGATCTGATCTCTTCCACTTCCACACAGGATGGAGATCAGAACAAAGAGCTGAATGAT
CTGGCATCTAACAATCAACCTTCATTGTCTCACAGTCACTCGAGTTTGCTTAGCATGGGA
TTTGCTGCTTCTGCTTCAGGATCTGGATCGCATGTTTCTTCTGCACCTATGGATTCATTC
CCTCCTATTCTGATGCAAACCTCATCCGGAGGCCAAACTGGGACATCATGGCCCAAAGCT
CCTGACGTCACAATGTCACGTTCAATGTCATCCAGATCACCACCAGGTGGCAGTATGCAG
ATTAATCTTGAACCATCTGTACAACAAGAGATTCCACCTCAACAAGTTGATGAAGTGCAA
CAACCAATTGAGCCGAGACCTGCACTGGACGTCCAAGAACTTGTTCGAATTCTCACCGAG
CTTCGACATCAGCAACGTGACCTGCTAAACGACCACCAGAGGGAGCTACAGACCATGACC
AAGAAACAGAGTCAAGTACAGAAACAAAACGACACATCTCTGAAGCGATCTGAGCAACAA
GGCGACAGACTGGAAAAGTCTCTAAAATCTGTGTCGGAAAATCAACGTCGCATGTTGAAC
GACATGAAGGCTATGCAAACTGGTGTGACCGAAGCTACAGCAAATAAGATAGGCAGGGTT
ATCAAGACTGAAATCAAGCAGTCCGTTTTACCAGGATTGGCTGGTAGCCTCGAACCCATC
AAGGAACAACTGAGTCAGTCGGTTGTCCAGAAGCTTACTGCAACTGATCACGTGATGAAA
GAAAACATTGCAAAATTGGTGAAATCGAAGGAAATGGTGGACAGCATTGCAGCAAGTACA
GCGAAATCCCTTCATGGACAAATCGTCAGCAGTCTTCCTGAGATTCTCTTCAATGCTGTT
GTTCCACCCGTCGAACGATCAAGTCAAGCAATGTTCCAACAACTGGCGGAAACCTACAAT
AGGGGAATGCAAGAACTTGTGGCAAAAATGGAGAAGCAACTTCAGTATCGCTTGAAACCT
GAACAAGACCGTCTGCAGAATCTCATCAAGGAATCATTCGATGCCACAAGTCAACTGCAA
GCTGCAAGTAAACGTCTTTCATCGGACGTTGCGAATGTTTTGCAAAAACAAATTCCTGCT
GAAGTAGAGAAATCGCTTACCAGATGCGAGGAACGTATTACCAATAGTGTTCTGGAGGCT
GTCAAAAAACAACAGCAGTCAGCATTCGCCGAACAAACTAAAGCAATAGGTGACGTGGTT
CGTGGAATCGTCACTGCCACCCTCGATGACAAGCTGGCAGCGTCAGGTGACAGTAGCACC
TTGGCACCTGGCACATCGCCGGTAGCAGGAGCCCTTGGTTCTCGTCCACAAAGTAGGGCC
AACATTTTGGACCAACAACAGCAGATTCTTAAGTTATTGCAACAAGGAAACGTTAACACT
GCATTCCAGACGGCTTTGACGGCTTCTGATCTAAACCTTGTGATGTATGTTTGTGAAACT
GTGGATCCGTCTGTGGTGTTTGGAGTGACACCTTGTCCGTTACAGCAACCAATACTACTA
TCTCTAATACAACAACTATCTAGCGATCTTACGACTAAAACTGAAATCAAATGGAAGTAT
CTGCAAGAAGCGGTAATGAACCTTGATCGCCGCCACCAGGTGACGCAAGAGTACATGCAT
AGCGTGTTAAGTGCCCTTGTGCAGAAATTGCAAACTTGCGCTCAAGGACCGCTTGAAACG
CCATCACTTGCCAAAGATCTTAAAATGCTTTCCATGGCTGCTCAGTCTCTCATGAAGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[15-203] 7.7E-10 |
| Pfam |
EDC4_WD40 (IPR032401) - T[15-135] 2.3E-14 - T[137-176] 8.6E-10 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[52-215] 4.58E-11 |
| SMART |
WD40_repeat (IPR001680) - T[88-127] 1.3E-5 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[95-136] 10.206 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[95-129] 10.909 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EDC4_HUMAN | 37.654 % | 280 | 1.06E-77 |