- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S23.g00933.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S23 [44,576 / 52,355]
Amino acid sequence
Length: 687
>Phmamm.CG.MTP2014.S23.g00933.01.p
MADPFHLVPNGIVSNSFPNITSTSTSLQSPINSFCNAISESLPSSTSGMFMQSSNEIMTS
SSDATLTSLLIGNIWEAMSIQDDIKQKHFCMCNDGIQADSYCHDCKEHLCARCVSAHYRV
TLTKDHVIVKADPKPTSDKELHRMLPYLLPPPCVNNKNFCNVHANELNQLFCETCSLVIC
QQCTIYEHSGHNFQFLQQVADSSKTASLKLLAEARNNYQAVEKNIQAIQQMAERIAGRSK
LVKSEIHATVQKHVLALEQREQELIGKVEQIRQDKIQATVLSSSPMSSTVLPHEDDLLLF
SPPDPGLYMAINTFGSIKASVCAQQDHTGTLKHSGGDTFEVIVKRPDSSTYRVNTHDMGD
GRYSFHVQFPFEGQYGVSAQYKGVSVRDSPYIVNVKQGMNYNSRVSHTPYLTFGKEGDKP
GDLCRPWGICCNSQGYLIVADRSNNRIQIFNADGSFRHKFGVAGTRPGQFDRPAGVTVDK
QGNIIVADKDNHRIQIFQLDGTFIRAFGERGSKNGQFNYPWDVAVSPNQMIAVTDTRNHR
VQIFTYDGTFLGKYGFEGSMWKHFDSPRGVAFTKDMRLIVTDFNNHRLVIIEPDLQSARY
LGSEGSQALQFLRPQGVAVDEEGNIVVADSRNHRLQVFTPSGGLLAIFGGNLQVSGSVQL
DRPSGVTVTKDGRIAVVDFGNNRVVVF
Nucleotide sequence
Length: 2,064
>Phmamm.CG.MTP2014.S23.g00933.01.t
ATGGCAGATCCATTCCACTTGGTTCCAAATGGAATTGTTTCCAATTCGTTTCCCAATATC
ACTTCTACTTCTACCTCTTTGCAAAGTCCAATCAACTCGTTCTGCAATGCAATAAGCGAA
TCTCTGCCTAGCTCAACAAGCGGGATGTTTATGCAGTCTTCAAACGAAATAATGACCTCA
TCCAGTGACGCCACATTGACCAGTTTGCTAATTGGTAATATTTGGGAAGCAATGTCAATA
CAAGACGACATCAAACAGAAACATTTTTGCATGTGTAATGATGGAATACAAGCAGACTCC
TATTGTCATGATTGCAAAGAGCACTTGTGTGCACGATGTGTATCAGCACACTATCGAGTA
ACACTGACAAAAGATCATGTTATTGTAAAGGCCGATCCCAAACCCACCTCAGACAAGGAA
CTTCACCGTATGCTACCTTACCTTCTACCTCCTCCTTGTGTTAACAATAAAAACTTTTGC
AATGTTCATGCTAATGAACTGAACCAACTATTTTGTGAAACATGTTCACTGGTAATTTGT
CAACAATGCACGATATATGAACACAGTGGCCACAATTTTCAATTCCTCCAGCAGGTGGCT
GATAGCAGTAAAACTGCTTCTCTCAAGTTACTGGCTGAAGCAAGAAACAACTATCAAGCT
GTGGAAAAAAATATTCAAGCAATCCAACAAATGGCTGAAAGAATTGCTGGCCGAAGTAAA
CTGGTCAAGTCTGAAATTCATGCCACTGTTCAAAAACATGTTCTTGCATTGGAACAAAGG
GAACAGGAGCTGATAGGAAAAGTGGAACAAATAAGACAAGATAAAATCCAAGCAACCGTT
CTATCGTCTTCACCAATGAGCTCCACTGTGTTGCCCCATGAGGACGACTTGCTCTTATTT
TCTCCACCAGACCCAGGCCTGTACATGGCAATTAACACATTTGGAAGTATAAAGGCATCA
GTTTGCGCTCAGCAGGACCACACAGGTACTCTTAAACACTCTGGAGGGGATACTTTTGAA
GTAATAGTAAAACGCCCAGACTCCTCCACATACAGAGTCAACACCCATGATATGGGTGAT
GGAAGGTATTCCTTCCATGTCCAGTTCCCTTTTGAAGGACAGTATGGAGTTTCTGCCCAA
TACAAAGGTGTTTCAGTTCGTGACAGTCCATACATTGTGAATGTTAAGCAAGGAATGAAC
TACAACTCACGGGTGTCACACACCCCATACTTGACATTTGGCAAAGAAGGTGACAAACCT
GGTGATCTTTGTCGACCGTGGGGTATATGCTGTAATTCTCAGGGATATCTGATCGTTGCT
GACCGTAGCAACAACAGAATCCAGATATTTAATGCTGATGGGAGTTTTCGTCATAAGTTT
GGTGTCGCTGGCACACGGCCTGGCCAGTTTGACAGACCTGCTGGTGTAACTGTTGACAAG
CAAGGCAATATAATTGTTGCTGACAAGGACAATCACAGAATACAGATATTCCAATTGGAT
GGAACTTTTATTCGTGCATTTGGCGAAAGAGGTTCAAAAAATGGTCAGTTTAATTATCCA
TGGGATGTGGCTGTCAGTCCAAATCAAATGATTGCTGTAACTGATACAAGAAACCACAGG
GTGCAGATATTCACATATGATGGCACATTTCTGGGAAAGTATGGATTTGAAGGTTCAATG
TGGAAGCACTTCGATTCTCCGAGGGGAGTGGCTTTCACTAAAGACATGCGACTGATTGTG
ACTGACTTCAACAACCACCGATTAGTGATTATCGAGCCTGACTTGCAATCAGCAAGATAT
CTTGGTTCAGAAGGTAGCCAAGCACTTCAATTTTTACGACCACAGGGTGTGGCTGTAGAT
GAGGAAGGTAACATAGTTGTAGCTGATTCAAGAAATCACAGACTGCAAGTATTTACCCCA
TCTGGTGGTTTACTAGCTATTTTCGGAGGAAATTTACAAGTTTCTGGCTCTGTACAACTG
GACCGTCCTTCAGGAGTTACAGTGACGAAAGATGGTCGTATTGCAGTGGTTGATTTCGGA
AACAACCGCGTGGTTGTCTTTTGA
| SMART |
Znf_B-box (IPR000315) - T[85-131] 3.0 - T[155-196] 2.9E-7 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[85-131] 9.698 - T[155-196] 11.007 |
| Pfam |
Znf_B-box (IPR000315) - T[156-194] 9.3E-9 |
| CDD |
Znf_B-box (IPR000315) - T[160-196] 8.90011E-8 |
| ProSiteProfiles |
Filamin/ABP280_repeat-like (IPR017868) - T[305-395] 13.493 |
| Gene3D |
Ig-like_fold (IPR013783) - T[305-391] 7.6E-10 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[325-403] 3.0E-11 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[392-507] 2.1E-30 - T[508-599] 4.7E-21 - T[600-687] 1.0E-23 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[413-453] 15.769 - T[457-500] 16.921 - T[507-547] 16.921 - T[551-594] 12.829 - T[598-641] 16.736 - T[649-687] 12.562 |
| Pfam |
NHL_repeat (IPR001258) - T[423-450] 2.4E-7 - T[470-497] 1.1E-9 - T[517-544] 1.2E-8 - T[564-590] 7.1E-5 - T[611-638] 4.8E-10 - T[660-687] 3.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 44.331 % | 579 | 0 |
| TRIM2_HUMAN | 26.183 % | 199 | 1.81E-54 |
| TRIM3_HUMAN | 27.575 % | 212 | 3.69E-59 |
