- Region 'REG00001432' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S2332.g16546.01.t
Possible name(s)
LHX1; LHX3; LHX4
Gene model
Location
S2332 [9,483 / 12,107]
Amino acid sequence
Length: 367
>Phmamm.CG.MTP2014.S2332.g16546.01.p
MSSLINSIVPKNLGQQMNYTQNEKITTATDNGETTIVSRRNASTSDEIVSFYATGKLDEF
LDQSDDEFAFHENEDGDDGIVLDGDDEGESLADLHYPSFLPTQRNKIPTHQESDAKPSVS
YRNRNNKSENVVIASSLNSEFDDSGVGCNATEHETSSFDATQITSHLDSHTTNDVLFSLL
SSETTFKAEIPKCTGCDSHIFDRYILKVQERPWHANCLKCSECGSQLTDKCFSRGNTVYC
KEDFFRRHGTKCASCHQGIPPTEVVRRAQDNVYHLECFQCFMCQQELGTGDQFYLLDDNR
LVCKKDYEQARARDIDVENGLKRPRTTITAKQLETLKIAYNQSSKPARHVREQLSAETGL
DMRVVQV
Nucleotide sequence
Length: 1,104
>Phmamm.CG.MTP2014.S2332.g16546.01.t
ATGTCTTCTCTTATCAACAGTATTGTGCCGAAGAACTTGGGCCAACAGATGAACTACACA
CAAAATGAAAAGATTACCACAGCAACTGATAATGGGGAAACGACAATCGTATCCCGCCGA
AACGCTTCGACCTCCGATGAAATCGTTTCGTTTTATGCTACTGGCAAACTCGACGAATTT
TTAGATCAATCAGATGATGAATTTGCGTTTCATGAAAATGAAGATGGGGATGACGGCATT
GTCCTGGATGGAGATGATGAAGGTGAATCACTAGCAGACCTTCATTACCCTTCTTTCTTG
CCTACTCAACGAAACAAAATTCCAACACACCAAGAATCTGATGCGAAACCTTCTGTTTCT
TACCGCAACAGAAACAACAAATCTGAGAATGTCGTTATAGCCAGCAGTTTAAACTCTGAA
TTTGATGATTCGGGTGTTGGATGTAACGCTACCGAACATGAGACAAGCTCATTTGATGCA
ACGCAGATAACTTCTCATTTAGATTCTCACACAACAAACGACGTTTTGTTTTCGTTACTT
TCATCGGAAACAACTTTTAAAGCTGAGATTCCGAAATGCACCGGATGCGATTCGCATATA
TTTGATCGGTACATTTTGAAAGTTCAGGAGCGGCCATGGCATGCAAACTGTCTGAAGTGT
TCCGAATGTGGGTCTCAATTAACAGACAAATGTTTCTCTCGTGGGAACACTGTGTATTGC
AAGGAGGACTTTTTTAGGCGACATGGAACAAAGTGCGCATCTTGCCATCAGGGTATCCCT
CCAACCGAAGTTGTACGCCGCGCTCAGGACAACGTTTACCATTTAGAATGTTTCCAATGT
TTCATGTGCCAGCAGGAGCTTGGCACAGGTGACCAGTTTTATCTCCTGGACGACAACCGC
CTAGTATGCAAAAAAGATTATGAACAGGCTAGAGCACGAGATATCGACGTCGAGAACGGT
TTGAAGCGACCACGAACAACAATAACTGCAAAGCAACTGGAAACACTGAAAATCGCCTAC
AATCAAAGTTCTAAGCCCGCAAGACATGTTCGAGAACAATTGAGTGCTGAAACCGGCTTG
GACATGAGAGTTGTTCAGGTATGA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[191-249] 11.633 - T[250-313] 14.157 |
| SMART |
Znf_LIM (IPR001781) - T[192-243] 8.1E-15 - T[251-306] 1.5E-17 |
| Pfam |
Znf_LIM (IPR001781) - T[193-248] 2.8E-13 - T[252-310] 8.3E-19 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[252-287] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[319-367] 9.475 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[319-367] 1.24E-8 |
| CDD |
Homeobox_dom (IPR001356) - T[322-367] 6.67755E-10 |
| Pfam |
Homeobox_dom (IPR001356) - T[322-367] 1.3E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 68.715 % | 277 | 8.92E-91 |
| LHX3_HUMAN | 69.274 % | 276 | 3.66E-90 |
| LHX1_HUMAN | 44.843 % | 202 | 1.58E-61 |