- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S21.g00893.02.t
Possible name(s)
PRDM1; ZNF235; ZNF683
Gene model
Location
S21 [330,674 / 334,530]
Amino acid sequence
Length: 634
>Phmamm.CG.MTP2014.S21.g00893.02.p
APYSNAPISSKSCKQEDINGNNMASVAATQQSTAMTDAPNMHPRRSTETQVPQSPKPKPK
SISFSVRSLLDHNVTSPSDSGYGSGSPSPEQSACRDPMSSPTFTSKETSPEIRKSSSDDS
AEMPAFSMLPMYYQSLLYAMNSQFLARQSSLASPAGNHAPESGKPPLPTPEANPLLAKQL
GECKSDEKVRAELCEQFYQYQSKLANMAHETKSEKLHGNPSFQQISERMKSASISTPTSE
THPWKTEVIPKCQRSPQAKVSPPSFNASNLELQSQANPFLRTPFPPMGMPMLSTDYYMMQ
MGKLFWDNAIRSAAAAASVLQQPKPQYNPMDMASTLNSDRWQKFLAASCRGSQKRQHKLP
VTLQAGMNPFVAEGMNQADCRFQSQVATTPAGWRPSETTHHRREREHQRHSEKSTESVYH
NQQQTQSRRTSNERSPSSPGAGFINFCNNAMNTQSTHNPQMLANFLTPNISPPKSVSPTH
SNTSSLNSDGSSGSMRCKRGPNSGYKSLPYPLRKENGKIVYECNVCFKKFGQLSNLKVHL
RVHTGERPFKCETCGKGFTQLAHLQKHHLVHTGEKPHECGVCHKRFSSTSNLKTHMRLHS
SEFSCNVKSVMCTSNAGVPPRPFGHITSVPGLWY
Nucleotide sequence
Length: 1,959
>Phmamm.CG.MTP2014.S21.g00893.02.t
GGGCACCCTACAGCAATGCCCCGATCTCAAGCAAATCGTGCAAGCAAGAAGACATCAATG
GCAACAATATGGCGTCGGTCGCTGCCACTCAGCAGTCCACAGCCATGACGGACGCGCCAA
ACATGCACCCAAGGCGCTCTACTGAAACACAGGTGCCGCAATCCCCTAAGCCAAAACCAA
AGTCGATTAGTTTCTCGGTTAGGTCGTTGCTTGACCACAACGTAACCTCCCCATCGGACA
GTGGTTACGGTAGCGGTAGCCCAAGCCCTGAACAGTCAGCCTGCAGGGATCCGATGTCGT
CGCCAACTTTCACAAGCAAAGAAACGTCCCCCGAGATAAGAAAATCTTCCTCCGATGACA
GCGCGGAAATGCCGGCATTTTCCATGCTGCCTATGTACTACCAAAGTTTGCTTTACGCAA
TGAACTCACAATTTCTCGCAAGACAGTCTTCGCTTGCCAGTCCGGCGGGAAATCACGCAC
CAGAGTCCGGCAAGCCGCCTTTGCCGACACCCGAAGCGAACCCACTGCTTGCTAAACAAC
TGGGAGAGTGCAAAAGTGATGAAAAAGTTCGGGCTGAATTATGTGAACAATTTTACCAAT
ACCAATCGAAACTGGCCAACATGGCACACGAAACCAAGTCGGAAAAGTTACATGGCAACC
CTTCTTTCCAACAAATCAGCGAACGAATGAAATCGGCATCGATCTCCACTCCAACGAGCG
AAACACATCCCTGGAAAACCGAAGTTATTCCAAAATGTCAACGTAGCCCACAAGCAAAGG
TTTCACCTCCGAGTTTTAACGCCTCAAACCTGGAGCTTCAATCTCAAGCGAACCCGTTTT
TGCGCACACCCTTCCCTCCCATGGGCATGCCAATGCTTTCTACCGACTACTACATGATGC
AAATGGGCAAATTGTTCTGGGACAACGCCATTCGAAGTGCAGCAGCCGCAGCCAGCGTTT
TGCAACAACCAAAACCACAGTACAACCCTATGGACATGGCATCAACATTGAACAGCGACC
GTTGGCAAAAATTCCTGGCAGCGTCGTGTCGAGGAAGCCAGAAACGTCAACATAAACTAC
CGGTGACTTTACAAGCAGGGATGAATCCATTCGTGGCGGAAGGTATGAACCAAGCCGATT
GTCGTTTTCAGTCGCAAGTAGCAACAACCCCAGCAGGATGGAGACCTTCCGAAACAACGC
ACCATCGCCGAGAACGCGAACACCAAAGGCACAGCGAAAAGTCGACAGAGAGCGTTTACC
ATAATCAGCAACAAACGCAATCGCGGCGTACGTCCAACGAACGCAGCCCGTCTAGTCCCG
GTGCCGGGTTCATCAATTTCTGCAATAACGCCATGAACACCCAGAGCACTCATAACCCAC
AAATGCTCGCAAACTTTCTCACCCCAAACATTTCACCCCCAAAGTCGGTGTCTCCTACCC
ACAGCAACACCTCATCCCTCAACAGCGACGGAAGCTCGGGGTCAATGCGCTGCAAACGTG
GCCCAAACTCGGGCTACAAATCTCTTCCCTACCCACTTCGCAAGGAGAACGGCAAGATTG
TTTACGAGTGCAATGTCTGCTTCAAAAAATTTGGACAACTGTCGAACTTGAAGGTTCATC
TGCGAGTTCACACCGGAGAACGCCCGTTTAAATGTGAAACATGTGGCAAAGGTTTTACCC
AACTTGCCCACCTTCAAAAACACCACCTTGTCCACACTGGAGAAAAACCACACGAATGTG
GCGTTTGTCACAAGCGTTTCAGTTCCACAAGCAACTTGAAGACTCACATGCGACTTCATA
GTAGCGAATTTTCGTGCAACGTGAAGTCCGTAATGTGCACAAGCAACGCTGGAGTTCCTC
CCCGACCTTTCGGCCACATCACAAGCGTGCCTGGACTGTGGTACTAAAGTCGTCTTTCTC
CAACAACAAAAGTCACCGAAACGGTGTGTAAAATCAGAC
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[510-558] 6.46E-14 - T[547-599] 1.63E-16 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[521-543] 1.5E-4 - T[549-571] 4.2E-4 - T[577-599] 8.5E-5 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[521-548] 16.103 - T[549-576] 16.789 - T[577-604] 12.799 |
| SMART |
Znf_C2H2_type (IPR013087) - T[521-543] 0.0031 - T[549-571] 0.0084 - T[577-599] 0.0038 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[523-543] . - T[551-571] . - T[579-599] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN235_HUMAN | 54.082 % | 115 | 1.22E-26 |
| PRDM1_HUMAN | 75.41 % | 197 | 8.62E-54 |
| ZN683_HUMAN | 62.992 % | 168 | 3.11E-45 |