- Clone 'cien53228' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S21.g00893.01.t
Possible name(s)
PRDM1; ZNF235; ZNF683
Gene model
Location
S21 [330,640 / 334,000]
Amino acid sequence
Length: 646
>Phmamm.CG.MTP2014.S21.g00893.01.p
MQDERLAYESHWAPYSNAPISSKSCKQEDINGNNMASVAATQQSTAMTDAPNMHPRRSTE
TQVPQSPKPKPKSISFSVRSLLDHNVTSPSDSGYGSGSPSPEQSACRDPMSSPTFTSKET
SPEIRKSSSDDSAEMPAFSMLPMYYQSLLYAMNSQFLARQSSLASPAGNHAPESGKPPLP
TPEANPLLAKQLGECKSDEKVRAELCEQFYQYQSKLANMAHETKSEKLHGNPSFQQISER
MKSASISTPTSETHPWKTEVIPKCQRSPQAKVSPPSFNASNLELQSQANPFLRTPFPPMG
MPMLSTDYYMMQMGKLFWDNAIRSAAAAASVLQQPKPQYNPMDMASTLNSDRWQKFLAAS
CRGSQKRQHKLPVTLQAGMNPFVAEGMNQADCRFQSQVATTPAGWRPSETTHHRREREHQ
RHSEKSTESVYHNQQQTQSRRTSNERSPSSPGAGFINFCNNAMNTQSTHNPQMLANFLTP
NISPPKSVSPTHSNTSSLNSDGSSGSMRCKRGPNSGYKSLPYPLRKENGKIVYECNVCFK
KFGQLSNLKVHLRVHTGERPFKCETCGKGFTQLAHLQKHHLVHTGEKPHECGVCHKRFSS
TSNLKTHMRLHSSEFSCNVKSVMCTSNAGVPPRPFGHITSVPGLWY
Nucleotide sequence
Length: 1,941
>Phmamm.CG.MTP2014.S21.g00893.01.t
ATGCAAGACGAGCGTCTAGCGTACGAGAGCCACTGGGCACCCTACAGCAATGCCCCGATC
TCAAGCAAATCGTGCAAGCAAGAAGACATCAATGGCAACAATATGGCGTCGGTCGCTGCC
ACTCAGCAGTCCACAGCCATGACGGACGCGCCAAACATGCACCCAAGGCGCTCTACTGAA
ACACAGGTGCCGCAATCCCCTAAGCCAAAACCAAAGTCGATTAGTTTCTCGGTTAGGTCG
TTGCTTGACCACAACGTAACCTCCCCATCGGACAGTGGTTACGGTAGCGGTAGCCCAAGC
CCTGAACAGTCAGCCTGCAGGGATCCGATGTCGTCGCCAACTTTCACAAGCAAAGAAACG
TCCCCCGAGATAAGAAAATCTTCCTCCGATGACAGCGCGGAAATGCCGGCATTTTCCATG
CTGCCTATGTACTACCAAAGTTTGCTTTACGCAATGAACTCACAATTTCTCGCAAGACAG
TCTTCGCTTGCCAGTCCGGCGGGAAATCACGCACCAGAGTCCGGCAAGCCGCCTTTGCCG
ACACCCGAAGCGAACCCACTGCTTGCTAAACAACTGGGAGAGTGCAAAAGTGATGAAAAA
GTTCGGGCTGAATTATGTGAACAATTTTACCAATACCAATCGAAACTGGCCAACATGGCA
CACGAAACCAAGTCGGAAAAGTTACATGGCAACCCTTCTTTCCAACAAATCAGCGAACGA
ATGAAATCGGCATCGATCTCCACTCCAACGAGCGAAACACATCCCTGGAAAACCGAAGTT
ATTCCAAAATGTCAACGTAGCCCACAAGCAAAGGTTTCACCTCCGAGTTTTAACGCCTCA
AACCTGGAGCTTCAATCTCAAGCGAACCCGTTTTTGCGCACACCCTTCCCTCCCATGGGC
ATGCCAATGCTTTCTACCGACTACTACATGATGCAAATGGGCAAATTGTTCTGGGACAAC
GCCATTCGAAGTGCAGCAGCCGCAGCCAGCGTTTTGCAACAACCAAAACCACAGTACAAC
CCTATGGACATGGCATCAACATTGAACAGCGACCGTTGGCAAAAATTCCTGGCAGCGTCG
TGTCGAGGAAGCCAGAAACGTCAACATAAACTACCGGTGACTTTACAAGCAGGGATGAAT
CCATTCGTGGCGGAAGGTATGAACCAAGCCGATTGTCGTTTTCAGTCGCAAGTAGCAACA
ACCCCAGCAGGATGGAGACCTTCCGAAACAACGCACCATCGCCGAGAACGCGAACACCAA
AGGCACAGCGAAAAGTCGACAGAGAGCGTTTACCATAATCAGCAACAAACGCAATCGCGG
CGTACGTCCAACGAACGCAGCCCGTCTAGTCCCGGTGCCGGGTTCATCAATTTCTGCAAT
AACGCCATGAACACCCAGAGCACTCATAACCCACAAATGCTCGCAAACTTTCTCACCCCA
AACATTTCACCCCCAAAGTCGGTGTCTCCTACCCACAGCAACACCTCATCCCTCAACAGC
GACGGAAGCTCGGGGTCAATGCGCTGCAAACGTGGCCCAAACTCGGGCTACAAATCTCTT
CCCTACCCACTTCGCAAGGAGAACGGCAAGATTGTTTACGAGTGCAATGTCTGCTTCAAA
AAATTTGGACAACTGTCGAACTTGAAGGTTCATCTGCGAGTTCACACCGGAGAACGCCCG
TTTAAATGTGAAACATGTGGCAAAGGTTTTACCCAACTTGCCCACCTTCAAAAACACCAC
CTTGTCCACACTGGAGAAAAACCACACGAATGTGGCGTTTGTCACAAGCGTTTCAGTTCC
ACAAGCAACTTGAAGACTCACATGCGACTTCATAGTAGCGAATTTTCGTGCAACGTGAAG
TCCGTAATGTGCACAAGCAACGCTGGAGTTCCTCCCCGACCTTTCGGCCACATCACAAGC
GTGCCTGGACTGTGGTACTAA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[522-570] 6.46E-14 - T[559-611] 1.73E-16 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[533-560] 16.103 - T[561-588] 16.789 - T[589-616] 12.799 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[533-555] 1.5E-4 - T[561-583] 4.3E-4 - T[589-611] 8.7E-5 |
| SMART |
Znf_C2H2_type (IPR013087) - T[533-555] 0.0031 - T[561-583] 0.0084 - T[589-611] 0.0038 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[535-555] . - T[563-583] . - T[591-611] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN235_HUMAN | 54.082 % | 115 | 1.28E-26 |
| PRDM1_HUMAN | 75.41 % | 197 | 8.46E-54 |
| ZN683_HUMAN | 62.992 % | 168 | 3.44E-45 |