- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S21.g00883.01.t
Possible name(s)
PRDM1; ZNF235; ZNF683
Gene model
Location
S21 [162,229 / 164,180]
Amino acid sequence
Length: 414
>Phmamm.CG.MTP2014.S21.g00883.01.p
MTDNKIYNTKESIITAALDLRVREVDRRKPFYTTAESAIATLESAEPLDLSLKSTKVSRA
TDENNNIWSAGCGDSRTSQQSTNNLFQYPTATSGSRTFWQAFLTMLHTEMPVYKANQTAM
EFAQRRKAFIAAATTLYPSFLRSWAIGKEQMCLPQLGNSFEVEQQRNTILNRLTSRMYWE
SRNWNNNTSGASIPSKTSSSDSRKMPLTCLERIKSNRIGSNTNCFVNRTTMHDGTDRPSS
GYRSLPYPLRKENGRIVYECNVCLKRFGQLSNLKVHLRVHTGERPFKCQVCTKGFTQLAH
LQKHHLVHTGEKPHECGVCHKRFSSTSNLKTHLRLHSNEKAESSLHEFPTSNQTEELVDN
CHSSCQLNRFPERPLHNPVSNGQQFYHTKPSSEDFMRNRDFFQSVSGSVSTSFE
Nucleotide sequence
Length: 1,245
>Phmamm.CG.MTP2014.S21.g00883.01.t
ATGACTGACAACAAGATATATAATACTAAAGAGTCAATTATCACAGCGGCATTGGACTTA
CGGGTACGTGAGGTTGATAGACGAAAACCCTTTTACACAACTGCAGAAAGTGCTATTGCA
ACACTGGAATCTGCTGAACCATTAGATCTTTCTCTTAAGTCAACCAAAGTTTCAAGAGCC
ACTGATGAAAACAACAATATATGGAGTGCAGGTTGTGGTGATTCAAGGACAAGCCAACAG
TCAACAAACAACCTATTTCAATATCCAACTGCAACCAGTGGGTCAAGGACATTTTGGCAA
GCCTTTTTGACCATGCTTCATACAGAGATGCCAGTTTACAAAGCTAATCAAACGGCAATG
GAGTTTGCTCAACGTCGCAAAGCGTTTATCGCTGCAGCAACAACTCTTTACCCTAGCTTT
TTAAGATCTTGGGCCATTGGAAAGGAACAAATGTGCTTGCCACAATTAGGCAACAGTTTT
GAGGTAGAACAACAAAGAAATACAATTTTAAATAGATTGACATCAAGAATGTACTGGGAG
AGTAGAAATTGGAACAATAACACTTCTGGTGCATCAATACCCTCGAAAACAAGCTCCAGC
GATAGCAGGAAAATGCCATTGACATGCCTGGAAAGAATAAAGTCAAATCGCATTGGTTCA
AATACAAACTGCTTCGTAAACAGGACCACGATGCACGATGGTACAGACAGACCAAGTAGT
GGATATAGGTCCTTACCATACCCCTTGCGCAAGGAAAACGGCAGGATTGTTTACGAATGC
AACGTTTGTCTGAAGCGATTCGGGCAACTTTCAAACCTGAAGGTCCATTTGCGGGTTCAC
ACTGGTGAACGCCCCTTCAAGTGTCAAGTTTGTACGAAAGGTTTTACCCAACTTGCCCAC
CTTCAGAAGCATCACCTTGTCCACACTGGAGAAAAACCACACGAATGTGGCGTTTGTCAC
AAACGTTTTAGTTCCACAAGCAATTTAAAGACTCACCTGAGACTCCATAGCAACGAAAAG
GCGGAAAGCAGCCTACATGAATTCCCAACTTCAAACCAGACTGAGGAGCTAGTTGATAAT
TGCCACAGCTCCTGCCAATTAAATCGATTTCCTGAAAGACCACTACACAATCCAGTCAGC
AACGGCCAACAATTCTATCACACTAAGCCGTCTAGTGAAGATTTTATGAGAAACCGTGAT
TTCTTTCAATCTGTATCTGGTTCGGTCTCAACAAGTTTTGAGTAA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[254-304] 7.21E-16 - T[295-340] 1.68E-13 |
| SMART |
Znf_C2H2_type (IPR013087) - T[258-280] 0.0022 - T[286-308] 0.033 - T[314-336] 0.012 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[258-285] 16.145 - T[286-313] 15.583 - T[314-341] 13.817 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[258-280] 1.7E-4 - T[286-308] 0.0013 - T[314-336] 2.0E-4 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[260-280] . - T[288-308] . - T[316-336] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN235_HUMAN | 53.535 % | 113 | 3.72E-27 |
| PRDM1_HUMAN | 85.149 % | 196 | 1.33E-55 |
| ZN683_HUMAN | 63.636 % | 167 | 1.36E-46 |
