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TRANSCRIPT CARD

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  1. Clone 'cibd070h08' > 
  2. Clone 'AHC0AAA50YP24' > 
  3. Clone 'ma191c19' > 
  4. Clone 'cibd040g12' > 
  5. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S218.g05569.01.t

Possible name(s)

CSDE1

Gene model

Phmamm.CG.MTP2014.S218.g05569

Location

S218 [108,066 / 128,245]

Sequences

Amino acid sequence

Length: 1,166

>Phmamm.CG.MTP2014.S218.g05569.01.p
MKRVPYSWSPNSITPNNMPVNTSLSNLLDAQPFRPQASLMHNFESMYFDFVLKLFVWFMC
TDSNHLLLSEQQKVLVTGGIAALQQHQQEAKERQMINRRSLTRTVSCGVFTQNGNIRPSA
LNQHRALQRSTSFDSNPILNFPPFSNPANAPGSSSPNAVSPASTPGLNNGYRSRETGVIE
KLLVSYGFIKCADREGRLFFHYSQYHGEAQHLHINDEVEFEVSMDTRTGKPVAVQVVQLQ
KGTVVFEVLSEERILGEVTNPAPPLSLVPGQASFNVVPGGTTVVAGHGYKPSEKGEPIVS
RKLGSLSYERMGEYFFLHYSANDLTNPNLILQPGDKVSFNIATEKRTSVMRARKITLVER
APPKRFTGIVTAMKDSFGFIERADVVKEIFFHYSEVSSNVPDLHVGDHVEFSVQERNNKD
VATDIRLLPLGSVQLEQISNELFVGTIEKPLPAKAPNKVVNETTIAGGDATSPNQKESAV
ISINGSPPQQPSLSLAGVLCYVNPQGETCRIRFGEKDRAANCLHTLRQGDKVSFLTITDK
RNGQQRAAGVTLLLDETLNSSNEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCELLDPA
HHIRMSDEVEFTVLLDPVAEKQSRMHATRIKLLPKGSVIFHTVTDAIYCGIVETLPGASP
TAPPKSPNDCLFSPALGPNPGIIVYSVNNNPTDETSDGVARIPFATKDFRDWMDALSLKI
GDKVEFKICEVKRTNAQNAVDLRLIGRRSAPEEQGGKRRTFSSSLSSSGLKLAPLFEEAM
VVNDQDANDQNNYPTHTEVSLPHFALENVPLRKPASRPVTIRAPDSPAHSDHAPSDSDVA
SVETEQIQENGVDVKTEGDMPKVSDAIPDEKEEKVENKNSTDEGRLFGWVSTLKETFGFI
ETIDHSSEIFFHYSEMQSPVDQYKVATPVSYVCGIKEEKAYALHVIKLTDDDIPVKEVIE
TKVVKGKVLKPLKSVNPGQNSYQGLIEFKETNEKDQTSIKTISFSPLSLSDRRDFIQIGD
KVTFQVCTDTNSNMQRAVNVNFGFINYEVKGSDGGSGKLFFHMSEVRDTTQTINAGATVE
FSVIYNQRSGKFSASRVRLADALPKQQRPERLRLRSTCDQTTGPTVQVVRKPKGPTENAI
GFTMTRSVTTDTLTTAGQSSKGPNDA

Nucleotide sequence

Length: 3,501

>Phmamm.CG.MTP2014.S218.g05569.01.t
ATGAAACGGGTGCCGTATTCGTGGTCACCCAACAGTATTACACCAAACAACATGCCGGTA
AACACGTCACTCAGCAACCTTCTTGATGCTCAGCCATTCCGTCCTCAAGCTTCTTTAATG
CACAATTTTGAGTCCATGTATTTTGATTTTGTTCTGAAATTGTTTGTATGGTTTATGTGC
ACAGATTCGAACCATTTGTTGTTATCAGAGCAGCAAAAAGTATTGGTAACTGGTGGAATA
GCGGCCCTGCAACAACATCAACAAGAAGCCAAAGAGAGACAGATGATCAATCGCCGTTCA
CTCACACGCACAGTTAGTTGTGGAGTCTTCACACAGAATGGCAACATTCGACCTTCTGCA
TTAAATCAGCACCGAGCCCTTCAGAGATCCACAAGTTTCGATTCCAATCCTATTCTAAAC
TTTCCCCCTTTCTCCAATCCTGCAAATGCACCTGGGTCCTCATCACCGAATGCTGTATCC
CCTGCCTCAACCCCAGGACTTAACAATGGGTATCGGAGTCGGGAGACTGGAGTCATTGAG
AAACTGCTTGTGTCTTATGGATTCATTAAATGTGCAGACCGTGAAGGTCGTTTGTTTTTC
CACTACAGCCAGTACCATGGTGAAGCACAACACTTACACATAAATGATGAAGTTGAGTTT
GAGGTATCAATGGATACACGCACCGGAAAACCAGTTGCTGTCCAAGTGGTGCAACTTCAA
AAAGGAACAGTCGTTTTCGAAGTATTAAGTGAGGAACGGATTCTGGGAGAAGTTACAAAC
CCTGCTCCTCCTTTGTCCCTGGTTCCAGGACAGGCTTCTTTCAATGTCGTCCCAGGTGGA
ACCACTGTTGTGGCCGGACATGGGTACAAACCAAGCGAGAAGGGCGAGCCAATTGTCTCA
CGAAAACTCGGAAGTCTGTCATATGAAAGAATGGGGGAATATTTCTTCTTACATTATTCA
GCAAATGACCTCACCAACCCAAATCTTATTCTTCAGCCAGGAGATAAAGTCTCCTTCAAT
ATTGCTACTGAAAAAAGGACGAGTGTGATGCGGGCGCGCAAAATCACTCTTGTGGAACGA
GCTCCACCAAAGCGCTTCACTGGGATCGTCACTGCCATGAAGGATTCGTTCGGTTTCATC
GAACGCGCCGACGTAGTTAAAGAGATATTTTTTCACTACAGCGAAGTTTCATCAAATGTC
CCAGATCTTCACGTAGGCGATCACGTGGAATTCAGTGTACAAGAACGAAATAACAAGGAT
GTGGCCACGGACATACGACTTCTGCCGTTGGGTTCAGTGCAACTTGAGCAAATATCAAAC
GAACTATTTGTGGGAACTATTGAAAAGCCACTGCCAGCGAAGGCGCCTAACAAAGTCGTT
AACGAGACTACCATTGCTGGAGGTGACGCCACATCGCCAAATCAAAAGGAGTCTGCAGTG
ATTTCTATTAATGGTTCTCCTCCGCAACAACCATCTCTGTCACTAGCGGGCGTGCTGTGC
TACGTCAATCCACAAGGCGAAACTTGCAGGATTCGATTCGGAGAGAAGGACAGAGCTGCA
AATTGTCTTCACACGTTGAGGCAAGGCGACAAGGTGTCGTTTCTGACAATAACAGACAAG
AGAAACGGCCAGCAGAGGGCAGCAGGCGTCACATTATTGTTGGATGAAACATTGAACAGC
AGCAACGAAAAACGTGAACAGGGAATTGTTGCCGCAGTGAAAGAAGGATTCGGTTTCATT
AAATGCGTTGAAAGAGATTCTCGTCTTTTCTTCCACTGCTGTGAACTGCTCGATCCAGCT
CATCACATTCGTATGTCTGATGAAGTGGAATTCACTGTCCTGCTCGACCCTGTTGCTGAA
AAGCAGAGCAGAATGCACGCAACCCGAATCAAACTTCTTCCCAAGGGTTCGGTCATCTTT
CACACTGTCACTGATGCAATCTACTGCGGAATTGTCGAAACACTTCCAGGGGCTTCACCT
ACCGCTCCACCAAAAAGTCCGAATGACTGCCTGTTTAGTCCAGCCCTGGGACCGAATCCT
GGCATAATCGTGTACTCTGTCAATAACAACCCAACCGACGAAACAAGTGATGGAGTAGCT
CGTATTCCATTCGCCACCAAAGATTTCCGAGATTGGATGGACGCTCTTTCACTCAAAATC
GGAGACAAGGTTGAGTTCAAGATATGCGAAGTGAAGCGCACCAATGCACAGAACGCAGTG
GATCTAAGGTTAATAGGAAGGCGCAGCGCACCGGAGGAGCAGGGAGGAAAGAGGAGGACT
TTCTCCAGCTCTCTCTCCTCCTCTGGACTCAAACTTGCTCCTCTCTTCGAAGAGGCGATG
GTGGTTAATGATCAAGATGCAAATGACCAAAATAATTACCCCACGCACACTGAAGTGAGT
CTACCGCACTTTGCATTGGAGAATGTTCCGTTGAGGAAACCGGCCTCACGACCCGTTACT
ATCAGAGCCCCAGACAGCCCCGCCCACTCCGACCACGCCCCCAGCGACAGTGACGTAGCC
AGTGTTGAAACCGAGCAAATTCAAGAAAACGGTGTTGATGTCAAAACAGAGGGGGATATG
CCAAAAGTTTCTGATGCAATCCCAGACGAGAAAGAAGAGAAGGTTGAAAACAAAAACAGT
ACCGACGAAGGTCGCTTATTCGGCTGGGTGAGCACTTTGAAGGAGACTTTCGGGTTCATC
GAAACTATTGACCATTCGTCGGAAATCTTTTTCCATTATAGCGAGATGCAATCCCCTGTC
GACCAATATAAAGTAGCAACACCAGTGTCCTATGTTTGTGGCATTAAAGAGGAAAAAGCT
TATGCTCTGCACGTTATCAAACTGACTGATGACGACATTCCAGTGAAAGAAGTTATCGAA
ACAAAAGTGGTAAAAGGCAAAGTGCTAAAGCCGCTAAAATCCGTAAACCCGGGCCAAAAC
AGTTACCAGGGGTTAATCGAGTTCAAAGAAACCAACGAGAAAGACCAAACAAGCATTAAG
ACCATCTCATTTAGCCCATTGAGTCTCAGTGACCGAAGAGATTTTATCCAAATCGGCGAT
AAAGTAACATTCCAGGTGTGCACTGATACCAACAGCAACATGCAACGCGCTGTGAATGTT
AACTTTGGATTTATTAACTATGAAGTGAAAGGAAGCGACGGTGGAAGCGGGAAACTTTTC
TTTCACATGTCTGAAGTTCGTGACACAACACAAACTATCAATGCTGGAGCGACTGTTGAA
TTTTCAGTCATCTATAACCAGCGAAGTGGCAAATTCTCAGCCTCTCGGGTAAGATTAGCT
GATGCTCTTCCCAAACAGCAGCGCCCGGAAAGACTAAGACTCCGCAGTACATGCGACCAA
ACAACAGGTCCAACAGTTCAAGTAGTGCGAAAACCAAAAGGCCCGACTGAAAATGCCATA
GGCTTCACCATGACTCGCAGCGTCACTACAGATACACTCACCACCGCCGGGCAATCCTCC
AAAGGACCTAATGATGCGTAA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[170-243] 9.3E-16 - T[363-429] 2.03E-15 - T[557-637] 1.64E-13 - T[885-950] 1.15E-10 - T[1041-1100] 3.67E-9
Pfam
CSP_DNA-bd (IPR002059) - T[176-238] 3.1E-12 - T[367-426] 1.9E-15 - T[567-614] 2.0E-6 - T[888-947] 2.6E-6 - T[1039-1098] 3.9E-7
SMART
CSD (IPR011129) - T[176-239] 4.2E-10 - T[367-428] 7.3E-15 - T[567-633] 7.0E-5 - T[887-948] 0.068 - T[1036-1100] 0.15
CDD
CSP_DNA-bd (IPR002059) - T[186-236] 7.40397E-9 - T[367-427] 2.90298E-12 - T[1042-1099] 5.74147E-7
ProSitePatterns
Cold-shock_CS (IPR019844) - T[186-205] . - T[377-396] . - T[897-916] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CSDE1_HUMAN 40.365 % 363 2.87E-110