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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2051.g16109.01.t

Possible name(s)

COL5A1; ITLN1; ITLN2

Location

S2051 [1,275 / 8,918]

Sequences

Amino acid sequence

Length: 401

>Phmamm.CG.MTP2014.S2051.g16109.01.p
MAHTYVNNDAGDYETIEIKQGRYQPAANRKKRERQGPFSNVYVESSTDVYEESIKTTPKP
KTVHSSEQQGAFSNVYVESSTDVYEESIKTTPTPKTVHSSAPQTTGQTTLNTTESETTKS
PLGTFPNPARSCIQLRDTGFEDGIYVIQPSLKSFEVYCDMVAAGGGWILAATINDNDLSL
EESYSDLWFVTSSNNNDNIIVFYPDVNSILDRLEKKSSEIISLIKDFYFYNYGSHSYLMD
DTHLFGGNYGMEVRLYARPRCAYPSEYYTDCSLNDYVYYDLDATLYARPRCAYPSEYYTD
CSLNDYVYYDLDATRNGVLITETEIKAATYKILEIITETDFCPDCFYGDDVLSVPVQFSI
GNDSVINSMLPPSVKPLPTGVVQFRANGRTGSVYAMCPAVK

Nucleotide sequence

Length: 1,206

>Phmamm.CG.MTP2014.S2051.g16109.01.t
ATGGCTCATACTTATGTGAACAATGATGCTGGTGACTACGAAACTATCGAGATCAAACAA
GGTCGTTACCAGCCTGCAGCAAACAGAAAGAAACGAGAACGACAGGGGCCATTCTCAAAT
GTGTACGTGGAATCTTCCACAGACGTATATGAAGAGTCCATTAAAACAACACCAAAACCT
AAAACTGTACACAGTTCTGAACAACAGGGGGCATTCTCAAATGTGTACGTGGAATCTTCC
ACAGACGTATATGAAGAATCCATTAAAACAACACCAACACCTAAAACTGTACACAGTTCT
GCACCACAGACAACTGGACAAACAACTTTAAATACAACAGAATCTGAGACAACAAAATCA
CCGCTCGGTACTTTCCCAAATCCTGCTCGTTCATGTATTCAACTGAGAGACACAGGCTTT
GAAGATGGAATTTACGTCATACAACCGTCACTCAAATCGTTTGAGGTTTACTGTGACATG
GTTGCTGCTGGTGGTGGATGGATTCTCGCTGCAACTATCAACGACAATGATTTAAGTTTA
GAAGAAAGTTATAGTGATTTGTGGTTTGTTACATCGTCAAACAACAACGATAATATTATA
GTTTTTTATCCTGATGTGAATTCAATCTTGGATCGACTCGAGAAAAAATCTTCAGAAATC
ATAAGTTTGATAAAGGATTTCTATTTTTATAACTATGGTTCTCATTCTTATTTGATGGAT
GATACTCATTTGTTTGGAGGCAATTATGGAATGGAGGTTAGACTCTACGCAAGGCCGCGT
TGTGCATATCCGTCCGAATATTACACCGATTGTTCTCTTAATGATTATGTGTATTATGAT
TTGGATGCTACACTCTACGCAAGGCCGCGTTGTGCATATCCGTCCGAATATTACACCGAT
TGTTCTCTTAATGATTATGTGTATTATGATTTGGATGCTACGAGAAATGGAGTTTTAATA
ACCGAAACTGAGATTAAAGCTGCAACGTACAAAATATTGGAAATCATTACAGAAACTGAC
TTTTGTCCGGATTGCTTTTATGGTGATGACGTGCTTTCAGTACCAGTTCAGTTTTCCATC
GGAAACGATTCAGTGATTAACTCGATGCTGCCACCAAGTGTAAAACCTCTACCGACCGGT
GTTGTTCAGTTTCGTGCTAATGGACGAACTGGGAGCGTCTACGCAATGTGTCCTGCTGTT
AAGTAA

InterProScan

Gene3D
Fibrinogen_a/b/g_C_1 (IPR014716) - T[88-186] 4.2E-7
SUPERFAMILY
Fibrinogen-like_C (IPR036056) - T[121-188] 2.24E-9
ProSiteProfiles
Fibrinogen_a/b/g_C_dom (IPR002181) - T[123-169] 11.706
Pfam
Fibrinogen_a/b/g_C_dom (IPR002181) - T[131-178] 7.5E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value