- Transcript 'Cisavi.CG.ENS81.R65....' >
- Transcript 'Harore.CG.MTP2014.S8...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S204.g05315.02.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
S204 [91,740 / 95,732]
Amino acid sequence
Length: 696
>Phmamm.CG.MTP2014.S204.g05315.02.p
RTLRNTISNCAICGTRDSYNDMKNNVKVTCSENPCQDNVDCTDTVDGFVCGECPAGYHGN
GTVCEDVDECDTIQPCSLVTSCVNTAGGYFCTPCPRGYVESNTTIRNFVKQTCTDIDECA
ISNGECVKNSVCINEEGSYSCGDCIDGYEGNQTVGCQELRLCSDGGINPCSDDADCDVIG
TNRDYKCTCHVGFAGSGYFCGNDSDQDGLPDEKLPCHEKSCLKDNCPFVPNSGQEDSDND
GIGDACDGDADNDDVTNMEDNCVLVPNADQQNSDSDSHGDACDNCPNVKNSKQLDQDTNG
VGDVCDDDIDGDGIPNTSDNCDYTPNHDQGDMDNDGVGDACDNCPSQSNAMQIDTDNDLV
GDVCDDDADVDSDGRQNSVDNCPYVINSAQLDTDNDGVGDACDEDDDNDGIPDYGITTTG
DNCRLVFNPEQTDTNENGIGDVCENDRDGDKVHDWKDACPENVQVATTDFRTYQSVILDP
RGDAQIDPNWVVLNKGREIVQTQNSDPGLAIGYDSFDGVDFSGTFFVNTATDDDYAGFIF
SYQSSSRFYVVTWKQTEQTYWQATPFRAVAKPGLQLKAVHSTKGPGERMRNALWHYMDTA
GEVTVLWSDPIEQGWKDRTSYRWELQHRPHVGYIRIKFFEHSTLIADTGTILDNTVKGGR
LGCFCFSQENVIWSNLQYRCNDTLPQDVHQEPSPET
Nucleotide sequence
Length: 2,198
>Phmamm.CG.MTP2014.S204.g05315.02.t
CGAGGACTTTGCGAAATACTATTTCCAATTGCGCAATTTGTGGGACGCGAGATAGCTACA
ATGACATGAAAAACAATGTGAAAGTTACGTGTTCGGAAAATCCGTGCCAGGACAATGTGG
ACTGTACAGACACCGTCGACGGTTTCGTATGTGGCGAATGTCCAGCAGGGTACCACGGTA
ACGGAACGGTTTGCGAGGATGTTGATGAATGTGACACCATCCAGCCGTGCTCGCTTGTGA
CGTCATGTGTCAACACTGCCGGGGGATATTTTTGCACCCCTTGTCCTCGAGGTTACGTGG
AATCAAACACCACCATACGCAACTTCGTAAAACAGACATGCACCGATATAGACGAATGTG
CAATTAGCAATGGTGAATGCGTGAAAAACTCTGTCTGTATAAACGAAGAGGGTTCGTATT
CGTGCGGAGACTGCATTGACGGCTACGAAGGCAATCAAACTGTTGGATGCCAGGAGTTAC
GATTGTGTAGTGACGGGGGAATTAACCCTTGCAGCGATGACGCTGATTGTGACGTCATCG
GAACGAACCGTGACTACAAATGTACATGCCATGTGGGATTCGCTGGCTCCGGATATTTTT
GCGGCAATGATTCGGATCAGGATGGATTGCCAGACGAGAAACTGCCTTGTCACGAAAAAT
CCTGCCTAAAGGACAACTGTCCGTTCGTACCTAACAGTGGTCAGGAGGACTCCGACAATG
ACGGAATCGGTGATGCATGCGACGGTGACGCAGATAACGATGACGTCACTAACATGGAAG
ACAATTGTGTTCTGGTGCCAAACGCAGACCAACAGAACTCGGACAGTGATTCTCACGGTG
ATGCATGTGATAATTGTCCAAACGTGAAGAATTCCAAACAGTTGGATCAAGATACGAATG
GAGTCGGTGATGTTTGCGACGATGACATTGACGGAGACGGAATTCCAAATACGTCGGACA
ACTGTGATTACACGCCGAACCACGATCAAGGAGATATGGACAATGATGGAGTTGGAGACG
CATGCGACAACTGTCCATCGCAGAGCAACGCAATGCAGATCGATACGGATAACGATTTAG
TTGGTGACGTATGCGATGATGACGCGGACGTGGATAGTGACGGACGTCAAAACAGCGTCG
ACAATTGCCCCTACGTGATTAACAGTGCACAACTGGATACAGATAATGACGGAGTTGGTG
ATGCGTGTGACGAGGATGACGACAACGATGGAATTCCAGACTATGGCATCACTACAACTG
GCGATAATTGTCGTTTGGTGTTCAATCCAGAACAAACTGATACAAATGAAAACGGTATTG
GAGATGTGTGTGAAAACGACCGAGATGGCGACAAAGTCCATGATTGGAAGGACGCGTGTC
CAGAAAACGTCCAAGTGGCGACCACTGATTTTCGAACCTACCAAAGTGTGATTCTTGACC
CCCGAGGTGATGCCCAAATTGACCCCAACTGGGTAGTCCTTAACAAAGGACGAGAAATCG
TACAAACGCAGAATAGCGATCCGGGGCTTGCAATCGGGTACGACTCGTTCGACGGTGTGG
ACTTCAGTGGAACGTTCTTTGTTAACACAGCAACCGACGATGACTACGCTGGTTTCATTT
TCAGTTACCAGAGTAGTTCAAGGTTCTACGTGGTAACGTGGAAACAAACCGAACAAACTT
ATTGGCAAGCAACGCCCTTCCGAGCTGTGGCAAAGCCCGGACTACAACTCAAGGCAGTCC
ATTCTACCAAGGGTCCAGGGGAACGAATGAGAAATGCTTTGTGGCATTATATGGACACTG
CTGGTGAAGTTACGGTCTTGTGGAGCGACCCAATTGAACAAGGATGGAAAGACAGAACCT
CGTACAGATGGGAATTACAACACAGACCCCATGTTGGTTATATTAGAATAAAGTTCTTTG
AGCATTCGACACTTATTGCCGATACTGGAACAATCCTTGACAACACAGTGAAGGGAGGAA
GACTGGGTTGTTTCTGCTTTAGTCAAGAAAACGTCATCTGGTCTAATCTCCAGTACAGAT
GCAACGACACTCTACCACAAGATGTCCACCAAGAGCCAAGTCCTGAAACTTGAACCTTAA
AACGAAAGGTGCTGATGTACGGCACGAAAACAAGAAACCTTTTACAATGAGTAACCGATT
TGAAATCGGAGTTAGACGTGCAGCCAACTATAACGGAT
| PANTHER |
Thrombospondin (IPR037349) - T[18-689] 0.0 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[20-164] 1.16E-7 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[26-65] 8.696 - T[66-104] 6.664 - T[115-157] 8.634 - T[158-201] 10.032 |
| SMART |
EGF-like_dom (IPR000742) - T[29-65] 0.0065 - T[69-114] 4.5 - T[118-157] 0.095 - T[161-201] 0.51 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[30-65] 0.0083 - T[66-114] 1.6E-7 - T[115-157] 7.6E-7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[66-102] 1.6E-8 - T[115-153] 3.8E-8 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[115-141] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[162-283] 1.1E-19 - T[284-342] 6.4E-20 - T[343-470] 5.8E-41 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[187-200] . |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[200-283] 1.1E-9 - T[270-349] 1.57E-15 - T[340-462] 8.11E-29 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[202-234] 10.365 - T[235-270] 17.273 - T[271-293] 11.18 - T[294-329] 16.02 - T[330-352] 11.125 - T[353-390] 13.764 - T[391-431] 13.417 - T[432-467] 13.636 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[235-270] 2.1E-9 - T[295-329] 2.6E-11 - T[330-352] 1.0E-4 - T[354-390] 5.1E-10 - T[392-431] 7.8E-8 - T[432-465] 1.4E-9 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[468-683] 1.52E-96 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[471-685] 100.857 |
| Pfam |
Thrombospondin_C (IPR008859) - T[485-682] 7.8E-95 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 59.433 % | 758 | 0 |
| TSP3_HUMAN | 59.281 % | 762 | 0 |
| COMP_HUMAN | 58.083 % | 725 | 0 |