- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S204.g05315.01.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
S204 [88,912 / 95,218]
Amino acid sequence
Length: 814
>Phmamm.CG.MTP2014.S204.g05315.01.p
MTHREINLLVNDEARESDKIYRALHHDDAVSFFVNLKIPSRDDSISVALYRNEEEGRGRK
YFEISANGHKGRVTIKITSEDRREMLTNVFRDIWIADHKWHTILLHFKLLRSNIARVSLL
VDCVENGHQEINPWLPGNQENNTLSPLIKIGKKGRNNVQSHVKQAIMIPGKSLAFLRRNY
VSVCSQADRPETAESSLFNMINKYEPVSELLVQLSGTRDSYNDMKNNVKVTCSENPCQDN
VDCTDTVDGFVCGECPAGYHGNGTVCEDVDECDTIQPCSLVTSCVNTAGGYFCTPCPRGY
VESNTTIRNFVKQTCTDIDECAISNGECVKNSVCINEEGSYSCGDCIDGYEGNQTVGCQE
LRLCSDGGINPCSDDADCDVIGTNRDYKCTCHVGFAGSGYFCGNDSDQDGLPDEKLPCHE
KSCLKDNCPFVPNSGQEDSDNDGIGDACDGDADNDDVTNMEDNCVLVPNADQQNSDSDSH
GDACDNCPNVKNSKQLDQDTNGVGDVCDDDIDGDGIPNTSDNCDYTPNHDQGDMDNDGVG
DACDNCPSQSNAMQIDTDNDLVGDVCDDDADVDSDGRQNSVDNCPYVINSAQLDTDNDGV
GDACDEDDDNDGIPDYGITTTGDNCRLVFNPEQTDTNENGIGDVCENDRDGDKVHDWKDA
CPENVQVATTDFRTYQSVILDPRGDAQIDPNWVVLNKGREIVQTQNSDPGLAIGYDSFDG
VDFSGTFFVNTATDDDYAGFIFSYQSSSRFYVAVHSTKGPGERMRNALWHYMDTAGEVTV
LWSDPIEQGWKDRTSYRWELQHRPHVGYIRQVIA
Nucleotide sequence
Length: 2,445
>Phmamm.CG.MTP2014.S204.g05315.01.t
ATGACACACCGAGAAATCAATCTACTTGTTAACGATGAAGCACGGGAATCGGACAAAATC
TACAGAGCATTACATCATGATGACGCAGTATCGTTCTTCGTCAACCTTAAAATTCCGTCA
AGAGACGATTCAATCTCAGTAGCACTTTACAGAAACGAAGAGGAAGGCAGAGGCCGAAAA
TATTTTGAAATTTCCGCAAATGGCCACAAAGGAAGAGTGACAATAAAAATCACATCCGAG
GACAGAAGGGAAATGCTTACGAATGTATTTCGTGACATTTGGATTGCTGACCACAAGTGG
CACACAATCTTATTGCACTTCAAACTTTTAAGGTCGAATATTGCACGCGTGTCTCTGTTG
GTTGATTGCGTAGAAAACGGACATCAAGAAATTAATCCGTGGCTACCAGGGAACCAAGAA
AACAACACTCTATCTCCATTGATAAAGATTGGAAAGAAGGGAAGAAACAACGTGCAGTCC
CACGTAAAGCAAGCAATTATGATCCCCGGAAAAAGTCTTGCTTTCCTTCGACGCAATTAC
GTTAGTGTGTGTTCGCAAGCCGACAGGCCCGAAACTGCTGAATCGTCACTTTTTAACATG
ATCAACAAATATGAACCAGTTTCGGAACTTCTGGTTCAGCTGTCAGGGACGCGAGATAGC
TACAATGACATGAAAAACAATGTGAAAGTTACGTGTTCGGAAAATCCGTGCCAGGACAAT
GTGGACTGTACAGACACCGTCGACGGTTTCGTATGTGGCGAATGTCCAGCAGGGTACCAC
GGTAACGGAACGGTTTGCGAGGATGTTGATGAATGTGACACCATCCAGCCGTGCTCGCTT
GTGACGTCATGTGTCAACACTGCCGGGGGATATTTTTGCACCCCTTGTCCTCGAGGTTAC
GTGGAATCAAACACCACCATACGCAACTTCGTAAAACAGACATGCACCGATATAGACGAA
TGTGCAATTAGCAATGGTGAATGCGTGAAAAACTCTGTCTGTATAAACGAAGAGGGTTCG
TATTCGTGCGGAGACTGCATTGACGGCTACGAAGGCAATCAAACTGTTGGATGCCAGGAG
TTACGATTGTGTAGTGACGGGGGAATTAACCCTTGCAGCGATGACGCTGATTGTGACGTC
ATCGGAACGAACCGTGACTACAAATGTACATGCCATGTGGGATTCGCTGGCTCCGGATAT
TTTTGCGGCAATGATTCGGATCAGGATGGATTGCCAGACGAGAAACTGCCTTGTCACGAA
AAATCCTGCCTAAAGGACAACTGTCCGTTCGTACCTAACAGTGGTCAGGAGGACTCCGAC
AATGACGGAATCGGTGATGCATGCGACGGTGACGCAGATAACGATGACGTCACTAACATG
GAAGACAATTGTGTTCTGGTGCCAAACGCAGACCAACAGAACTCGGACAGTGATTCTCAC
GGTGATGCATGTGATAATTGTCCAAACGTGAAGAATTCCAAACAGTTGGATCAAGATACG
AATGGAGTCGGTGATGTTTGCGACGATGACATTGACGGAGACGGAATTCCAAATACGTCG
GACAACTGTGATTACACGCCGAACCACGATCAAGGAGATATGGACAATGATGGAGTTGGA
GACGCATGCGACAACTGTCCATCGCAGAGCAACGCAATGCAGATCGATACGGATAACGAT
TTAGTTGGTGACGTATGCGATGATGACGCGGACGTGGATAGTGACGGACGTCAAAACAGC
GTCGACAATTGCCCCTACGTGATTAACAGTGCACAACTGGATACAGATAATGACGGAGTT
GGTGATGCGTGTGACGAGGATGACGACAACGATGGAATTCCAGACTATGGCATCACTACA
ACTGGCGATAATTGTCGTTTGGTGTTCAATCCAGAACAAACTGATACAAATGAAAACGGT
ATTGGAGATGTGTGTGAAAACGACCGAGATGGCGACAAAGTCCATGATTGGAAGGACGCG
TGTCCAGAAAACGTCCAAGTGGCGACCACTGATTTTCGAACCTACCAAAGTGTGATTCTT
GACCCCCGAGGTGATGCCCAAATTGACCCCAACTGGGTAGTCCTTAACAAAGGACGAGAA
ATCGTACAAACGCAGAATAGCGATCCGGGGCTTGCAATCGGGTACGACTCGTTCGACGGT
GTGGACTTCAGTGGAACGTTCTTTGTTAACACAGCAACCGACGATGACTACGCTGGTTTC
ATTTTCAGTTACCAGAGTAGTTCAAGGTTCTACGTGGCAGTCCATTCTACCAAGGGTCCA
GGGGAACGAATGAGAAATGCTTTGTGGCATTATATGGACACTGCTGGTGAAGTTACGGTC
TTGTGGAGCGACCCAATTGAACAAGGATGGAAAGACAGAACCTCGTACAGATGGGAATTA
CAACACAGACCCCATGTTGGTTATATTAGGCAAGTCATAGCTTAA
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[21-136] 1.08E-5 - T[670-811] 5.38E-59 |
| PANTHER |
Thrombospondin (IPR037349) - T[147-753] 2.5E-263 - T[753-812] 2.5E-263 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[222-366] 1.43E-7 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[228-267] 8.696 - T[268-306] 6.664 - T[317-359] 8.634 - T[360-403] 10.032 |
| SMART |
EGF-like_dom (IPR000742) - T[231-267] 0.0065 - T[271-316] 4.5 - T[320-359] 0.095 - T[363-403] 0.51 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[232-267] 0.0083 - T[268-316] 1.6E-7 - T[317-359] 7.6E-7 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[268-304] 2.0E-8 - T[317-355] 4.6E-8 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[317-343] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[364-481] 1.4E-19 - T[482-543] 2.7E-21 - T[544-670] 3.9E-41 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[389-402] . |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[402-484] 1.44E-9 - T[471-551] 7.06E-16 - T[542-664] 1.12E-28 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[404-436] 10.365 - T[437-472] 17.273 - T[473-495] 11.18 - T[496-531] 16.02 - T[532-554] 11.125 - T[555-592] 13.764 - T[593-633] 13.417 - T[634-669] 13.636 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[437-472] 2.6E-9 - T[497-531] 3.1E-11 - T[532-554] 1.2E-4 - T[556-592] 6.1E-10 - T[594-633] 9.4E-8 - T[634-667] 1.7E-9 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[673-814] 59.481 |
| Pfam |
Thrombospondin_C (IPR008859) - T[687-753] 1.9E-28 - T[754-813] 3.9E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 45.103 % | 626 | 0 |
| TSP3_HUMAN | 45.995 % | 650 | 0 |
| COMP_HUMAN | 55.61 % | 575 | 0 |