- EST 'ma198j14' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1.g00025.01.t
Possible name(s)
UNC5B; UNC5C; UNC5D
Gene model
Location
S1 [306,810 / 323,007]
Amino acid sequence
Length: 668
>Phmamm.CG.MTP2014.S1.g00025.01.p
AKPPTGRSLGETVKQGAELENSSQTRLGQTSTDKQVPKEVNQFPISNEEVSEMGDSGHSG
SRRPSFLIQPQDHYVYKHSPARLTCSVESAREVVVKCNDRKPSPSMVEVHEEKNSKDAST
ITLMVTVTRNDVEALFSQHKYWCQCIAYNKDGMTKSRKALVETAYLRKNFEQEPVGGEVV
LGNEYKLHCRPPAGEPAPSIEWLWNDVAIDPMVEENIFITQDGDLIIRTTSVEDSGNYSC
VARNGASKRKSHPATLRVIVNGGWGSWSSWSGCGSKCGIGEERRLRTCTHPQPQNGGASC
QGVGIQTRACTKLCPVDGGWTDWSRWSACSPECVHRRRRTCSRPEPYNNGMTCPGSDIET
KNCSGGLCAETRNLTTPTDNQNLVLYSCLFVALALLLMIVIATMIVFRRKRGGSTFSRSP
TSGYGPGRTSTAYPNSPINGHMGADDFCIIPTKPPSVMKGDPLPPFSYPPAYSALDQAYK
MCNHPGSQSASDTSSSPPTEPRFILHNEHTWRSGDIRYHGNYARASPCSRDDVTIPQREF
PDLTSSFVGRTYHEKPTAAPSVDSTTHESPASGRPCDASPHKRVTFGMQQGYDSGFEGET
NPNYAPKRPVRKTEPLAEFQEEWRDSSDSSDAGYSCSHHVTSDTHQQFSADTSVRKSNQD
NIVASART
Nucleotide sequence
Length: 2,012
>Phmamm.CG.MTP2014.S1.g00025.01.t
CAGCGAAACCTCCAACAGGTCGCAGTTTAGGCGAAACTGTTAAACAAGGTGCTGAGTTGG
AGAACTCTTCGCAAACCCGACTCGGTCAAACTTCAACGGACAAACAAGTTCCAAAAGAAG
TCAACCAGTTTCCAATCTCAAACGAAGAGGTAAGCGAGATGGGTGATTCGGGTCACAGTG
GAAGCAGAAGACCCAGTTTCCTGATACAACCCCAGGACCATTACGTGTACAAGCACTCGC
CCGCTAGGTTGACCTGCTCGGTGGAGTCGGCCAGGGAAGTGGTAGTGAAATGTAATGATC
GAAAACCGAGTCCTTCTATGGTTGAGGTCCATGAGGAGAAGAATTCGAAAGATGCAAGTA
CAATCACTTTAATGGTGACGGTGACACGAAACGACGTGGAGGCATTATTCTCACAACACA
AGTATTGGTGCCAGTGCATTGCTTACAACAAGGACGGGATGACAAAAAGTCGGAAAGCCC
TGGTTGAAACAGCGTATTTACGTAAAAACTTCGAGCAGGAACCAGTTGGAGGTGAAGTCG
TGTTGGGAAACGAATATAAACTTCATTGTCGACCTCCTGCGGGTGAACCAGCACCAAGTA
TCGAGTGGTTATGGAACGATGTTGCGATCGATCCAATGGTTGAGGAAAACATCTTCATCA
CACAAGATGGGGATCTAATTATCCGAACCACCAGCGTGGAGGACTCGGGTAACTACAGTT
GTGTCGCGAGGAACGGAGCCTCCAAGAGGAAGAGCCATCCTGCTACTCTGCGCGTGATTG
TTAACGGAGGTTGGGGATCGTGGTCCTCCTGGTCCGGATGCGGGAGTAAATGTGGGATCG
GGGAGGAGCGGAGGTTGAGGACTTGCACTCATCCTCAGCCGCAGAATGGAGGAGCTTCGT
GTCAGGGAGTCGGTATCCAAACACGAGCTTGTACGAAGTTGTGTCCAGTTGACGGGGGAT
GGACGGATTGGTCCAGGTGGTCAGCTTGTAGTCCGGAGTGCGTTCACAGACGTAGACGGA
CATGCAGCAGACCCGAACCTTATAACAACGGGATGACTTGTCCTGGAAGTGACATTGAAA
CAAAGAACTGCTCGGGTGGATTATGCGCAGAAACCCGAAACCTGACGACCCCGACTGACA
ATCAGAACTTGGTGCTGTACAGTTGTCTCTTCGTTGCCCTCGCTCTCCTACTCATGATCG
TCATAGCAACCATGATCGTGTTCCGGCGGAAGAGAGGGGGAAGTACCTTCTCACGGTCAC
CTACTTCCGGGTACGGACCCGGAAGAACGTCCACGGCTTACCCGAATTCACCGATTAACG
GCCACATGGGAGCCGACGATTTTTGTATAATCCCGACAAAACCCCCGTCGGTTATGAAGG
GAGATCCCCTGCCCCCCTTCAGTTACCCCCCTGCCTACTCCGCTCTGGATCAAGCCTACA
AAATGTGCAACCACCCAGGCAGCCAATCAGCGAGTGACACGTCATCATCCCCTCCCACAG
AGCCGCGGTTTATTCTTCACAACGAACACACTTGGCGCTCGGGGGATATTCGTTACCATG
GAAACTACGCGCGCGCCTCTCCTTGTTCGAGAGATGACGTCACGATTCCGCAAAGGGAGT
TTCCCGATCTGACGTCATCATTTGTTGGTCGGACTTATCACGAAAAACCAACAGCGGCAC
CTTCTGTCGATTCAACCACGCACGAATCACCCGCTAGTGGGCGCCCGTGTGACGCGAGCC
CGCATAAACGAGTGACGTTCGGAATGCAACAAGGTTACGATTCCGGGTTCGAAGGAGAAA
CCAATCCAAACTACGCCCCCAAGCGACCGGTACGCAAGACTGAACCGCTTGCCGAGTTCC
AAGAGGAATGGAGGGACTCGAGCGATTCTTCTGACGCGGGTTACAGCTGTTCGCATCACG
TGACCTCCGATACGCATCAGCAGTTTTCAGCTGATACCAGTGTGAGAAAATCGAATCAGG
ATAATATAGTCGCTTCTGCACGAACGTAGCGG
| Gene3D |
Ig-like_fold (IPR013783) - T[60-168] 4.0E-27 - T[169-261] 4.3E-18 |
| PANTHER |
UNC5 (IPR037936) - T[61-411] 3.0E-112 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[170-260] 3.6E-17 |
| SMART |
Ig_sub (IPR003599) - T[174-259] 4.6E-8 |
| SMART |
Ig_sub2 (IPR003598) - T[180-247] 1.7E-7 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[182-257] 10.934 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[260-310] 1.06E-12 - T[314-368] 2.88E-10 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[261-315] 11.923 - T[317-369] 11.372 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[262-314] 4.8E-14 - T[316-368] 4.3E-12 |
| SMART |
TSP1_rpt (IPR000884) - T[264-315] 1.4E-10 - T[320-369] 1.5E-7 |
| Pfam |
TSP1_rpt (IPR000884) - T[266-312] 9.8E-6 - T[322-368] 0.0076 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| UNC5C_HUMAN | 45.115 % | 332 | 6.92E-102 |
| UNC5B_HUMAN | 43.223 % | 322 | 2.0E-98 |
| UNC5D_HUMAN | 47.557 % | 296 | 1.99E-88 |
