- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1.g00016.01.t
Possible name(s)
COL12A1; COL21A1; ITGA11
Gene model
Location
S1 [114,853 / 128,188]
Amino acid sequence
Length: 801
>Phmamm.CG.MTP2014.S1.g00016.01.p
MSDIILAANLAITPGTYTLVRSQTYQSSQNFPVQSGNNNSSNQLSPAYFGYDIVMSKQRL
LIGAPKRTNPENPKDQCTNREVETEKKCLAKGNIVSCQASSLLNNTQCSSIAPPSAEPGD
SFGQSVDVLPDGKLGACSPTKEMACGVLMYRPGFCYRSSTGGSTWKSDPRTTIKDGSGSI
TRANFTLVKRWTKSMASYFSTESGFARIGVVQYSHYFENRQVQKYIKTEVVLGSCRTRVC
FDNKVDGINQFNYTTYTAHALNKTVIDFESSNRFKLSTTTKVMILLTDGRSSDGEFLPQT
ADYVRSRGITTFAIGVGNYNETELRTIATGNQDSKKNVFTVSEFTDLAKIVGQLKAAILT
VTLEVQVSWGFLALDPGALTYLTSKVSPNSSSTFYGQQISFGTDKLVIGQPKASGDGNST
DDGDVQRATGRISICDYASLLNTNKSSCTDVTPPQAKPGDSFGLSLSYSEYMTACSATRT
QECKNANHNQGFCYRSTDSGRSWTADPQSSLTGCSNNLDIMFVLDGSGSIGDDFVVVKNW
TMDMASFFDIESGYDQIGVVQYSYHSKKKSQISTEVVLGECKTRACFNNKVSQIDLLGSQ
TFTAHALNKTVEDFKGSWRYGKSGTSQIMILLTDGRSTDNHLIQSSADYVRSMGITTFAV
GVGQDIDQNELKVIANGGNSTSRVYNVSDFGQLQAIVTELRGEIFKVALEGGSATSSTSV
YNLKLGETGFSISESKKRVNGKYIVSVLLVVAMQKEDCNTPKGVELRDVGSFGTNGSECD
HLLPAYSYYKLSVNVLTVKMR
Nucleotide sequence
Length: 2,406
>Phmamm.CG.MTP2014.S1.g00016.01.t
ATGTCAGACATTATACTGGCCGCCAATTTGGCCATCACGCCTGGAACCTACACACTAGTC
AGGTCACAAACTTATCAGAGTTCTCAGAACTTTCCTGTACAAAGTGGAAATAACAATTCT
TCAAACCAACTCTCCCCGGCCTACTTCGGATACGACATTGTAATGAGCAAACAAAGGCTT
CTGATTGGGGCACCAAAGCGAACTAATCCTGAAAATCCGAAAGACCAGTGCACAAACAGG
GAAGTAGAAACAGAGAAAAAGTGCCTGGCGAAGGGAAACATTGTTTCCTGTCAAGCTTCA
AGCTTACTCAACAATACTCAGTGTAGCTCTATAGCTCCACCCAGCGCTGAACCTGGTGAT
TCATTCGGACAAAGCGTCGACGTATTACCGGATGGTAAACTAGGCGCATGTTCCCCTACC
AAGGAAATGGCTTGCGGAGTTTTAATGTACAGACCTGGATTCTGTTACCGAAGCTCGACT
GGAGGATCAACTTGGAAGTCAGATCCAAGAACTACGATAAAAGACGGTTCGGGTTCGATT
ACACGAGCAAACTTTACCCTTGTAAAGCGGTGGACGAAATCGATGGCTTCATACTTCAGT
ACGGAATCTGGATTTGCAAGAATTGGAGTGGTTCAATATTCACATTACTTTGAAAACAGA
CAAGTACAGAAATACATCAAAACTGAAGTTGTGCTTGGATCTTGTCGGACACGAGTTTGC
TTTGATAACAAAGTGGATGGGATCAATCAGTTTAACTACACGACATACACTGCGCATGCG
CTAAACAAGACCGTGATAGATTTCGAATCGTCAAACAGGTTCAAACTTAGTACCACGACC
AAAGTCATGATTCTACTCACCGACGGACGTTCTTCGGACGGTGAATTCCTGCCACAAACT
GCTGATTACGTCAGATCAAGGGGAATTACCACATTTGCGATTGGAGTTGGAAATTACAAC
GAAACAGAGCTGAGGACGATTGCTACAGGAAACCAAGACTCAAAGAAAAACGTCTTCACT
GTGTCGGAATTCACCGATCTTGCGAAGATTGTTGGACAACTTAAGGCGGCCATTCTGACG
GTCACATTGGAAGTTCAAGTTAGTTGGGGATTTCTTGCTCTGGATCCCGGGGCCTTAACG
TATCTTACAAGCAAAGTATCTCCGAACTCTTCATCGACGTTTTATGGCCAGCAGATCTCA
TTTGGGACTGACAAATTGGTCATTGGACAACCAAAGGCGTCAGGTGATGGAAATTCTACT
GATGACGGAGATGTTCAAAGAGCGACGGGGAGGATCTCTATATGCGACTATGCAAGTTTG
CTTAACACAAACAAGTCATCGTGTACGGATGTTACTCCTCCACAAGCCAAACCTGGGGAT
TCGTTTGGTCTTAGTCTCTCATACTCCGAATATATGACAGCGTGCTCCGCAACACGTACA
CAGGAATGCAAGAATGCAAACCACAATCAAGGATTTTGTTATCGCAGCACTGACAGTGGC
AGAAGTTGGACAGCAGACCCACAAAGTAGCTTAACAGGTTGTTCCAATAATTTGGACATC
ATGTTTGTTCTGGACGGGTCGGGTTCAATTGGTGACGATTTCGTGGTGGTTAAAAACTGG
ACCATGGACATGGCTTCGTTCTTCGACATTGAAAGCGGTTATGATCAAATCGGAGTCGTT
CAATATTCCTACCACAGCAAGAAGAAAAGTCAAATTTCGACTGAAGTGGTTCTTGGTGAA
TGCAAAACTCGTGCTTGTTTCAATAACAAAGTATCTCAAATCGACCTACTTGGATCCCAA
ACCTTTACCGCCCACGCCTTAAACAAGACGGTAGAAGATTTCAAAGGCTCTTGGAGATAC
GGAAAATCGGGCACATCCCAAATCATGATATTACTCACCGACGGAAGATCAACTGACAAC
CACCTAATTCAATCATCAGCTGATTATGTCCGCTCAATGGGAATCACTACATTTGCTGTT
GGTGTTGGACAAGATATTGACCAAAATGAATTAAAGGTAATCGCAAACGGAGGCAACAGC
ACTTCAAGAGTTTACAATGTTTCTGATTTCGGTCAACTTCAGGCAATCGTCACCGAACTT
CGCGGGGAAATCTTTAAAGTCGCACTGGAAGGTGGCTCAGCAACATCAAGCACGTCTGTG
TATAATCTGAAACTTGGAGAAACTGGATTTTCTATATCCGAGAGCAAAAAGCGTGTTAAT
GGGAAATACATAGTTTCTGTTCTCCTTGTCGTTGCGATGCAGAAAGAGGATTGTAACACA
CCAAAAGGGGTTGAGTTAAGAGACGTTGGATCATTTGGAACGAATGGAAGCGAATGCGAT
CATTTATTACCGGCTTATTCGTACTACAAACTTTCTGTGAATGTTTTGACAGTGAAAATG
CGCTAA
| Gene3D |
Integrin_alpha_N (IPR028994) - T[44-168] 1.7E-42 - T[391-733] 9.3E-51 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[169-356] 1.7E-42 - T[510-722] 9.3E-51 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[169-354] 20.731 - T[519-700] 26.138 |
| SMART |
VWF_A (IPR002035) - T[170-349] 1.0E-15 - T[517-705] 3.1E-27 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[175-360] 2.82E-31 - T[504-705] 6.36E-42 |
| Pfam |
VWF_A (IPR002035) - T[175-352] 2.4E-27 - T[519-698] 7.6E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 33.679 % | 89.4 | 3.18E-18 |
| ITA11_HUMAN | 28.021 % | 94.7 | 8.33E-20 |
