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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S193.g05098.01.t

Possible name(s)

SNF8

Gene model

Phmamm.CG.MTP2014.S193.g05098

Location

S193 [51,629 / 53,218]

Sequences

Amino acid sequence

Length: 230

>Phmamm.CG.MTP2014.S193.g05098.01.p
MRRRGVGASAVTKKKLESARYKERGTELAAQQLEQLSSQLETFHTNLEEFAAKHKNVDPL
ASGKGFWSEMLGVGDFYYELGVQAVEICIATRSQNGGILTMDELHKRLMKTRGRYGQDIT
QEDIRTAIKKLKVLGTGFALLGSASKQIIQSVPGELNMDHTAILDLAQQTNGKVSASQVQ
SALLWSPERTQQVLEHLTREGMAWADDQAKDKQRLYWFPALFNSDRKLKS

Nucleotide sequence

Length: 693

>Phmamm.CG.MTP2014.S193.g05098.01.t
ATGAGGCGGCGTGGTGTCGGAGCAAGTGCTGTAACAAAAAAGAAGCTTGAAAGTGCCCGC
TACAAAGAACGTGGTACTGAGTTGGCTGCACAACAGTTGGAACAATTAAGCAGTCAATTA
GAAACTTTTCACACTAACTTGGAAGAATTTGCTGCCAAGCACAAGAATGTTGACCCATTA
GCATCTGGAAAAGGATTTTGGTCGGAAATGCTTGGTGTTGGAGATTTTTATTATGAACTT
GGTGTTCAGGCAGTTGAAATTTGTATCGCAACACGATCACAAAATGGAGGAATCTTGACA
ATGGATGAGTTGCATAAAAGACTTATGAAAACACGGGGAAGGTATGGACAAGATATTACA
CAAGAGGACATCAGGACAGCTATAAAAAAATTGAAGGTACTGGGAACAGGTTTTGCATTA
CTTGGCTCGGCTAGTAAACAGATTATTCAATCAGTCCCTGGAGAGCTCAACATGGATCAC
ACAGCCATATTGGATCTTGCCCAACAAACCAATGGCAAAGTTTCTGCTTCACAAGTTCAG
TCAGCCCTGTTGTGGTCACCAGAGCGCACACAGCAAGTGCTAGAGCACTTAACACGAGAA
GGCATGGCATGGGCGGATGACCAAGCAAAAGATAAACAGAGATTGTATTGGTTTCCAGCA
CTTTTTAATTCTGATCGTAAGCTCAAATCTTGA

InterProScan

PANTHER
ESCRT-2_cplx_Snf8 (IPR016689) - T[1-56] 2.2E-80 - T[57-224] 2.2E-80
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[25-155] 1.01E-34 - T[156-222] 4.72E-15
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[72-152] 2.8E-30 - T[153-229] 4.3E-25

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SNF8_HUMAN 55.556 % 281 2.89E-96