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  1. Transcript 'KH2012:KH.C8.663.v1....'
  2. Transcript 'KH2012:KH.C10.113.v4...'
  3. Transcript 'KH2012:KH.C1.1040.v1...'
  4. Transcript 'Cisavi.CG.ENS81.R19....'
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S191.g05059.01.t

Possible name(s)

LEMD3; RBM23; RBM39

Location

S191 [12,796 / 14,206]

Sequences

Amino acid sequence

Length: 469

>Phmamm.CG.MTP2014.S191.g05059.01.p
MADDIDVEAMLEAPFQKENSMSKEKDRKKSDRKSRKRSRSRSRSKSHRHRRSRSRSKDRH
RRRRSRSHERRRKKSRSPRHRSPRRKEKTPTPPPKPRSPSPPDRDARTIFCYQLAQRIRT
RDLEEFFSAVGKVREVKLIQDKHSKRSKGIAYVEFKDLESVPLALGLSGQKVLGVPIVVQ
PTQSEKNKVAAAQMTLQQAARGPTRLYVGSLHENITEEMLKGIFSPFGRIEQVQIVKDQD
TGVSKGYAFITFAEADCAKRALDQLNGFEIAGKPIKLNTVGSAMDLTALSAFAGGPSFLD
NDAVERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQHALQLGQSMGLGLPQAQSAANTAP
PIATTCFQLSNMFDPQNESGNDWDKEIANDVIEECSRHGQVFHCFVDRESKGNVYVKCDT
TEAASKSVNALHGRYFAGNMITAAYVPLINYHSLFPDAAYAKAAIKPNR

Nucleotide sequence

Length: 1,410

>Phmamm.CG.MTP2014.S191.g05059.01.t
ATGGCAGATGACATTGATGTAGAAGCTATGCTGGAGGCTCCATTCCAAAAGGAAAACTCC
ATGAGCAAAGAAAAAGATAGGAAAAAAAGTGATCGCAAATCACGTAAACGCAGTCGCAGC
AGAAGTCGAAGCAAGAGCCACCGCCACAGAAGGTCACGATCCAGGAGCAAAGATAGGCAT
CGTCGCAGGAGAAGTAGATCACATGAACGCAGGCGCAAAAAGAGTAGGTCCCCAAGACAT
CGCAGCCCACGCAGAAAGGAAAAGACCCCTACTCCACCTCCGAAACCCAGGTCTCCAAGT
CCACCTGATCGTGATGCCAGAACTATATTCTGTTACCAACTGGCCCAACGAATTCGCACA
AGAGATCTTGAGGAGTTTTTCTCCGCTGTTGGAAAAGTTCGTGAGGTGAAACTCATCCAG
GACAAGCACTCGAAGCGCTCAAAGGGTATCGCTTATGTGGAGTTCAAGGATTTGGAGTCT
GTGCCTTTGGCTCTTGGTTTGAGTGGTCAAAAGGTTCTTGGTGTTCCTATTGTGGTACAG
CCCACACAATCTGAAAAGAACAAGGTTGCTGCAGCTCAAATGACTTTGCAGCAAGCTGCT
CGTGGGCCCACGCGGCTTTACGTAGGGTCACTTCACGAAAATATCACAGAGGAGATGCTA
AAGGGAATCTTTTCACCGTTTGGTCGCATTGAGCAGGTTCAAATCGTCAAAGATCAGGAT
ACAGGTGTCTCAAAAGGATATGCATTTATAACCTTCGCAGAGGCAGATTGCGCCAAGCGA
GCTCTTGACCAGCTGAATGGATTTGAAATAGCAGGAAAACCGATTAAGCTTAATACCGTC
GGCAGTGCTATGGATCTGACAGCCTTGTCTGCTTTTGCTGGTGGCCCCTCGTTTCTCGAT
AATGATGCTGTGGAAAGGGCAGGCATCGATCTTGGCACAACCGGACGACTGCAGCTAATG
GCAAAGCTGGCAGAAGGCACTGGTTTGGAAGTTCCGAGTGCCGCGCAACACGCTTTGCAG
TTGGGTCAATCTATGGGTCTTGGTCTCCCACAGGCTCAAAGTGCAGCCAACACTGCCCCA
CCCATCGCTACCACATGCTTCCAGCTGTCAAATATGTTTGATCCACAGAATGAGAGCGGC
AACGACTGGGATAAAGAAATAGCGAACGACGTGATTGAGGAGTGCTCACGTCACGGCCAG
GTCTTTCATTGTTTTGTTGACAGGGAGTCGAAGGGAAACGTCTACGTCAAATGCGACACC
ACGGAGGCTGCCAGCAAGTCTGTAAATGCATTACACGGGCGTTACTTCGCCGGTAACATG
ATTACGGCGGCATACGTTCCCCTCATCAACTACCACTCACTCTTTCCGGATGCGGCATAC
GCCAAGGCGGCCATTAAGCCCAACCGATGA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-192] 9.3E-23 - T[193-285] 3.6E-26 - T[359-469] 3.6E-31
TIGRFAM
RBM39_SF (IPR006509) - T[17-457] 3.3E-143
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[31-181] 1.48E-22 - T[203-445] 1.49E-31
ProSiteProfiles
RRM_dom (IPR000504) - T[107-184] 14.914 - T[204-282] 19.979
SMART
RRM_dom (IPR000504) - T[108-180] 2.2E-15 - T[205-278] 1.3E-28 - T[366-444] 0.51
Pfam
RRM_dom (IPR000504) - T[109-174] 4.6E-12 - T[206-276] 1.0E-22
Pfam
RBM39_linker (IPR029123) - T[302-383] 3.5E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MAN1_HUMAN 39.823 % 97.8 1.75E-21
RBM39_HUMAN 52.985 % 489 1.44E-170
RBM23_HUMAN 44.719 % 328 2.05E-108