- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S191.g05059.01.t
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
S191 [12,796 / 14,206]
Amino acid sequence
Length: 469
>Phmamm.CG.MTP2014.S191.g05059.01.p
MADDIDVEAMLEAPFQKENSMSKEKDRKKSDRKSRKRSRSRSRSKSHRHRRSRSRSKDRH
RRRRSRSHERRRKKSRSPRHRSPRRKEKTPTPPPKPRSPSPPDRDARTIFCYQLAQRIRT
RDLEEFFSAVGKVREVKLIQDKHSKRSKGIAYVEFKDLESVPLALGLSGQKVLGVPIVVQ
PTQSEKNKVAAAQMTLQQAARGPTRLYVGSLHENITEEMLKGIFSPFGRIEQVQIVKDQD
TGVSKGYAFITFAEADCAKRALDQLNGFEIAGKPIKLNTVGSAMDLTALSAFAGGPSFLD
NDAVERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQHALQLGQSMGLGLPQAQSAANTAP
PIATTCFQLSNMFDPQNESGNDWDKEIANDVIEECSRHGQVFHCFVDRESKGNVYVKCDT
TEAASKSVNALHGRYFAGNMITAAYVPLINYHSLFPDAAYAKAAIKPNR
Nucleotide sequence
Length: 1,410
>Phmamm.CG.MTP2014.S191.g05059.01.t
ATGGCAGATGACATTGATGTAGAAGCTATGCTGGAGGCTCCATTCCAAAAGGAAAACTCC
ATGAGCAAAGAAAAAGATAGGAAAAAAAGTGATCGCAAATCACGTAAACGCAGTCGCAGC
AGAAGTCGAAGCAAGAGCCACCGCCACAGAAGGTCACGATCCAGGAGCAAAGATAGGCAT
CGTCGCAGGAGAAGTAGATCACATGAACGCAGGCGCAAAAAGAGTAGGTCCCCAAGACAT
CGCAGCCCACGCAGAAAGGAAAAGACCCCTACTCCACCTCCGAAACCCAGGTCTCCAAGT
CCACCTGATCGTGATGCCAGAACTATATTCTGTTACCAACTGGCCCAACGAATTCGCACA
AGAGATCTTGAGGAGTTTTTCTCCGCTGTTGGAAAAGTTCGTGAGGTGAAACTCATCCAG
GACAAGCACTCGAAGCGCTCAAAGGGTATCGCTTATGTGGAGTTCAAGGATTTGGAGTCT
GTGCCTTTGGCTCTTGGTTTGAGTGGTCAAAAGGTTCTTGGTGTTCCTATTGTGGTACAG
CCCACACAATCTGAAAAGAACAAGGTTGCTGCAGCTCAAATGACTTTGCAGCAAGCTGCT
CGTGGGCCCACGCGGCTTTACGTAGGGTCACTTCACGAAAATATCACAGAGGAGATGCTA
AAGGGAATCTTTTCACCGTTTGGTCGCATTGAGCAGGTTCAAATCGTCAAAGATCAGGAT
ACAGGTGTCTCAAAAGGATATGCATTTATAACCTTCGCAGAGGCAGATTGCGCCAAGCGA
GCTCTTGACCAGCTGAATGGATTTGAAATAGCAGGAAAACCGATTAAGCTTAATACCGTC
GGCAGTGCTATGGATCTGACAGCCTTGTCTGCTTTTGCTGGTGGCCCCTCGTTTCTCGAT
AATGATGCTGTGGAAAGGGCAGGCATCGATCTTGGCACAACCGGACGACTGCAGCTAATG
GCAAAGCTGGCAGAAGGCACTGGTTTGGAAGTTCCGAGTGCCGCGCAACACGCTTTGCAG
TTGGGTCAATCTATGGGTCTTGGTCTCCCACAGGCTCAAAGTGCAGCCAACACTGCCCCA
CCCATCGCTACCACATGCTTCCAGCTGTCAAATATGTTTGATCCACAGAATGAGAGCGGC
AACGACTGGGATAAAGAAATAGCGAACGACGTGATTGAGGAGTGCTCACGTCACGGCCAG
GTCTTTCATTGTTTTGTTGACAGGGAGTCGAAGGGAAACGTCTACGTCAAATGCGACACC
ACGGAGGCTGCCAGCAAGTCTGTAAATGCATTACACGGGCGTTACTTCGCCGGTAACATG
ATTACGGCGGCATACGTTCCCCTCATCAACTACCACTCACTCTTTCCGGATGCGGCATAC
GCCAAGGCGGCCATTAAGCCCAACCGATGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-192] 9.3E-23 - T[193-285] 3.6E-26 - T[359-469] 3.6E-31 |
| TIGRFAM |
RBM39_SF (IPR006509) - T[17-457] 3.3E-143 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[31-181] 1.48E-22 - T[203-445] 1.49E-31 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[107-184] 14.914 - T[204-282] 19.979 |
| SMART |
RRM_dom (IPR000504) - T[108-180] 2.2E-15 - T[205-278] 1.3E-28 - T[366-444] 0.51 |
| Pfam |
RRM_dom (IPR000504) - T[109-174] 4.6E-12 - T[206-276] 1.0E-22 |
| Pfam |
RBM39_linker (IPR029123) - T[302-383] 3.5E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 39.823 % | 97.8 | 1.75E-21 |
| RBM39_HUMAN | 52.985 % | 489 | 1.44E-170 |
| RBM23_HUMAN | 44.719 % | 328 | 2.05E-108 |