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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C8.143.v1....' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S189.g05041.01.t

Possible name(s)

YBX1; YBX2; YBX3

Gene model

Phmamm.CG.MTP2014.S189.g05041

Location

S189 [183,476 / 191,637]

Sequences

Amino acid sequence

Length: 250

>Phmamm.CG.MTP2014.S189.g05041.01.p
MSESTNQPDQTTEDQPVKAEKKVLAMHCTGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAI
IKNNPKKYLRSVGDGEAVEFDVAASLRLIDVDTRDGNHGEESHCSILVVQRSREEGTDGE
LHEDEGQHDDAPPPRQNQRPRRYYYRRPPPPWYRRGPRRQENGEVVENGVDQNNEDKRPA
PRRQRRFPRRKGPPRDSQPVENGEAPAAAPEENGGEGEKRPQRRRNPRYRGIVLKAFQSP
ISQLFFAAFS

Nucleotide sequence

Length: 753

>Phmamm.CG.MTP2014.S189.g05041.01.t
ATGTCGGAGTCGACCAACCAGCCCGACCAAACCACTGAGGATCAACCAGTGAAAGCTGAA
AAGAAAGTGCTTGCTATGCACTGTACTGGTGTAGTGAAGTGGTTCAACGTTCGCAATGGT
TATGGTTTTGTAAATCGCGACGACAATAAGGAGGATGTATTTATCCACCAGACTGCAATT
ATCAAAAACAACCCCAAGAAATATCTGCGTAGTGTTGGGGACGGAGAGGCTGTCGAATTT
GATGTGGCAGCAAGTTTGCGGCTGATCGACGTCGATACAAGAGATGGCAACCACGGGGAA
GAAAGCCACTGTAGTATATTGGTGGTGCAGCGTAGTAGAGAGGAGGGTACTGATGGTGAA
TTGCATGAAGACGAAGGCCAGCATGATGACGCTCCCCCACCTCGTCAAAACCAGCGACCT
CGGCGTTATTACTATAGACGCCCGCCACCACCATGGTACAGGCGTGGCCCTCGTCGCCAG
GAGAATGGTGAAGTTGTAGAGAATGGGGTGGATCAGAATAATGAAGATAAACGTCCGGCT
CCGAGACGTCAGCGAAGGTTTCCTCGTCGCAAGGGACCACCTCGAGACAGCCAGCCTGTT
GAGAATGGGGAAGCCCCTGCTGCTGCCCCAGAAGAAAATGGTGGTGAGGGTGAAAAACGG
CCCCAGCGACGCCGCAACCCCAGATATCGTGGAATCGTTCTGAAGGCCTTTCAGTCCCCT
ATTAGTCAGCTGTTTTTCGCTGCTTTCAGTTAA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[24-83] 1.82E-16
CDD
CSP_DNA-bd (IPR002059) - T[28-82] 6.19247E-16
Pfam
CSP_DNA-bd (IPR002059) - T[28-83] 1.7E-18
SMART
CSD (IPR011129) - T[29-105] 1.3E-12
PRINTS
CSP_DNA-bd (IPR002059) - T[30-45] 3.3E-14 - T[51-60] 3.3E-14 - T[70-88] 3.3E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 71.831 % 117 1.93E-31
YBOX3_HUMAN 81.25 % 117 8.66E-31
YBOX2_HUMAN 42.353 % 117 4.56E-31