Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S186.g04981.01.t

Possible name(s)

AL139260.3; GJA10; GJA8

Gene model

Phmamm.CG.MTP2014.S186.g04981

Location

S186 [40,683 / 42,838]

Sequences

Amino acid sequence

Length: 260

>Phmamm.CG.MTP2014.S186.g04981.01.p
MAKISQAKKLRQEEQDKKKKQKEKQKEKNKKQQEAMRKKAMEDIRRRREESGPPEYAALE
DEAFIIDEKTDEKEKEKKEEKKDKDKDEDKVVATKLDSDTPSRLMLAYVAQVVLRLAVEI
GFMVLQFNIYVFKFWVPELFKCARWPCPNVVDCFVSRPKEKTIMLWIMFGTGLIMIVLNI
IELYHLGLRKIIEAWKQRGQDITKEYKTVNNMPHFGGHGRQYGGARYPRGYPQAVGIRVG
YARSSLSGEGGNDFDGDKFI

Nucleotide sequence

Length: 783

>Phmamm.CG.MTP2014.S186.g04981.01.t
ATGGCCAAGATCAGCCAGGCCAAGAAACTGCGCCAGGAGGAGCAGGACAAAAAGAAGAAA
CAAAAAGAGAAACAAAAAGAGAAAAATAAGAAGCAACAAGAGGCAATGAGGAAGAAGGCA
ATGGAGGACATCAGAAGACGGAGAGAAGAGAGTGGACCACCAGAATATGCTGCTTTGGAA
GACGAGGCGTTTATTATAGACGAAAAGACCGATGAGAAAGAAAAAGAAAAGAAGGAGGAA
AAGAAAGATAAAGACAAAGACGAGGATAAAGTTGTGGCGACCAAATTAGACTCCGACACT
CCGTCACGTCTTATGCTTGCCTACGTAGCACAGGTGGTATTGCGACTGGCTGTAGAGATT
GGATTTATGGTCTTGCAATTCAACATTTACGTGTTTAAATTCTGGGTGCCGGAACTTTTC
AAATGCGCAAGGTGGCCTTGCCCCAACGTGGTCGATTGCTTCGTGTCGAGGCCAAAGGAA
AAGACCATCATGCTCTGGATTATGTTTGGCACGGGACTGATCATGATAGTCCTTAATATT
ATCGAGCTCTATCACTTGGGTCTACGCAAAATCATCGAAGCCTGGAAACAACGAGGCCAG
GACATCACAAAAGAATACAAGACCGTCAACAACATGCCTCACTTTGGCGGCCACGGAAGA
CAATACGGTGGAGCAAGGTATCCAAGAGGTTACCCGCAAGCTGTCGGAATTCGGGTTGGT
TACGCAAGAAGCAGCTTGTCGGGAGAGGGCGGTAATGATTTCGACGGAGACAAGTTCATC
TGA

InterProScan

PANTHER	Connexin (IPR000500) - T[20-259] 1.2E-54
Gene3D	Connexin_N_sf (IPR038359) - T[57-199] 1.8E-37
Pfam	Connexin_N (IPR013092) - T[62-187] 2.4E-39
PRINTS	Connexin (IPR000500) - T[104-130] 3.8E-24 - T[142-162] 3.8E-24 - T[163-186] 3.8E-24
SMART	Connexin_CCC (IPR019570) - T[118-186] 4.1E-38
ProSitePatterns	Connexin_CS (IPR017990) - T[142-158] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CXA10_HUMAN	47.191 %	97.1	6.15E-23
CXA8_HUMAN	43.617 %	100	2.91E-24
CXA9_HUMAN	48.864 %	96.7	7.18E-23