Aniseed - Transcript Card

Clone 'AHC0AAA10YL19' >
Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S184.g04927.03.t

Possible name(s)

TRAM1; TRAM1L1; TRAM2

Gene model

Phmamm.CG.MTP2014.S184.g04927

Location

S184 [23,410 / 28,765]

Sequences

Amino acid sequence

Length: 305

>Phmamm.CG.MTP2014.S184.g04927.03.p
MGMPRKKPKNPPVMSHEFVIQNHADILACVAIVIVLGLISEATSKLSKPFIFLQYGVTDE
TEEEPENPDAPVPFPKEFGRGILDIFAVFFQALMIAVVHAVIQEYGVDKVSKKLHLSKTK
NSKFSESCQLLVWCVGSAGWGIHLLLQNKFISNIALLWEDYPHSVMSWENKLFMLIQMAY
WFHMYPELYFQKARKEDIPARIQYYTLHLIFITGAYILNFWRIAIVIATLHYIAEGVFHG
CRIAYFAEKNEVSSVGFSVWRILFPVARTFILALSFLMFWFGLGRAENQGIDFATGNFNS
FFIRL

Nucleotide sequence

Length: 943

>Phmamm.CG.MTP2014.S184.g04927.03.t
ATAAAACTTTACAAAAAACAAACAAACAATGGGAATGCCAAGAAAGAAGCCGAAGAACCC
ACCTGTGATGAGCCATGAATTCGTCATACAAAATCACGCTGATATCCTGGCTTGTGTGGC
TATTGTGATTGTGCTGGGATTAATTTCAGAAGCCACATCGAAGCTCAGCAAACCATTTAT
ATTCCTACAATATGGAGTAACTGATGAAACAGAGGAAGAACCAGAAAACCCTGATGCACC
AGTGCCTTTTCCAAAGGAGTTTGGACGTGGAATTCTTGATATTTTTGCTGTGTTTTTCCA
AGCTTTGATGATTGCAGTTGTTCATGCAGTGATTCAGGAATATGGTGTTGATAAAGTGTC
AAAGAAACTCCATCTTTCTAAAACAAAGAACAGCAAATTCAGTGAATCTTGTCAACTACT
TGTGTGGTGTGTGGGATCGGCTGGTTGGGGAATTCATTTGTTGCTTCAGAATAAGTTTAT
CAGCAACATTGCATTACTATGGGAGGATTACCCACACAGTGTGATGTCATGGGAGAACAA
GTTGTTTATGCTCATCCAGATGGCATATTGGTTTCATATGTATCCTGAACTCTACTTCCA
AAAAGCAAGAAAGGAAGACATCCCAGCTAGAATCCAGTACTACACTCTGCACCTTATATT
CATTACTGGTGCATATATCCTGAATTTCTGGAGGATAGCGATTGTTATTGCAACTTTGCA
TTACATTGCTGAAGGTGTTTTCCATGGATGTAGAATTGCATACTTTGCTGAGAAAAATGA
AGTATCAAGTGTGGGATTTTCTGTTTGGAGGATTTTGTTTCCGGTTGCTCGAACTTTCAT
TCTTGCTCTTTCCTTCCTCATGTTTTGGTTCGGACTGGGCAGAGCTGAAAACCAAGGAAT
TGATTTTGCAACTGGAAACTTTAACTCATTTTTTATCCGGTTA

InterProScan

PANTHER	Translocation_assoc_membrane (IPR016447) - T[1-305] 1.1E-127
PIRSF	Lag1/Lac1-like (IPR016439) - T[6-286] 1.1E-16
Pfam	TRAM1 (IPR013599) - T[48-120] 6.6E-14
SMART	TLC-dom (IPR006634) - T[122-304] 1.1E-7
Pfam	TLC-dom (IPR006634) - T[123-302] 3.8E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRAM1_HUMAN	46.557 %	271	1.73E-89
TRAM2_HUMAN	42.525 %	241	7.5E-78
TR1L1_HUMAN	40.134 %	219	2.01E-69