- Transcript 'Phmamm.CG.MTP2014.S7...' >
- Transcript 'KH2012:KH.L61.15.v1....' >
- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1711.g15500.01.t
Possible name(s)
BMP10; GDF6; NODAL
Gene model
Location
S1711 [5,391 / 8,021]
Amino acid sequence
Length: 549
>Phmamm.CG.MTP2014.S1711.g15500.01.p
MDMTQVSFCIAIVAFLLSCVHPSANGANLRQQIDLESSQGNLFTDLRDSEVLSPPTHISD
EHPTSAARPSAPSPPKMASRTDHAVSYDLDSSMDAVPQHMRDFHSRVLKHIHAASESQTD
DLATKASSEFMLSLYHHQETESTSSPKDINSKQGKALKKSDIVRSFSAIESYKQADTWVI
VFDLSAILQRERIRLSELNLKVPRDYNDVTKIELIDERATSEDGVTTLSRRKIASTHFNA
RQMPTSQKVSIDITRMIRRWYNENEKRTDKSSEQETIDDLVNERSGLSDENPTLFVFSSN
KQLDLIETVAAHQTRSRRSSATRGQRKVYKGRSGKRKSRKLSRKRNKTDKSRRLHSNSDS
NRIEENVYQYDMVSTNSLEFGTQIGQKKKTDSRETDEVMMWKKEQSEVRVVATKKTTHES
ESKKSPVKPNPFGFSFRFRTLEPIEPTHCRLVPFEVDFEKIGWGSWIVHPKKYNANRCVG
HCRNPTVHGAKPTNHAYLQSILSNQHDSNVPEPCCVPTKLKPISLLYLQDGEVHQQQHQD
MVVTECGCR
Nucleotide sequence
Length: 1,771
>Phmamm.CG.MTP2014.S1711.g15500.01.t
ATGGATATGACACAAGTATCGTTCTGCATCGCCATCGTGGCTTTTTTACTATCATGCGTT
CATCCTTCCGCTAACGGAGCCAACCTCCGTCAACAAATCGACTTGGAATCGAGTCAGGGC
AATCTCTTTACCGATCTGCGGGATTCGGAAGTCTTATCGCCGCCGACTCATATCTCCGAT
GAACATCCGACTTCAGCTGCACGCCCGTCAGCACCATCACCGCCCAAAATGGCGTCGCGC
ACCGACCATGCAGTATCGTACGATCTCGACTCGTCCATGGACGCAGTTCCACAACATATG
AGAGATTTTCATTCGCGAGTGCTGAAACATATTCATGCTGCCTCCGAATCGCAGACCGAT
GATCTAGCCACCAAGGCTTCATCCGAATTTATGCTCTCACTATACCACCACCAAGAAACT
GAGTCAACAAGCAGCCCAAAAGATATCAACAGCAAGCAAGGAAAGGCTCTGAAAAAATCT
GACATCGTTCGAAGCTTTAGCGCAATCGAATCATACAAGCAAGCAGACACTTGGGTCATC
GTGTTCGACCTGTCGGCCATTTTGCAGCGGGAAAGAATTCGTCTTTCCGAGTTGAATCTC
AAAGTTCCCCGTGACTACAATGACGTCACTAAAATCGAACTAATAGACGAAAGAGCCACT
TCCGAAGATGGTGTCACGACATTGTCGAGGAGAAAAATCGCCTCCACGCATTTTAATGCA
CGACAAATGCCTACAAGTCAAAAAGTTTCAATTGACATCACACGCATGATTCGTCGCTGG
TATAATGAAAACGAGAAGCGAACAGATAAGAGTTCCGAACAAGAAACCATTGATGATCTC
GTCAATGAAAGAAGTGGGTTGTCAGACGAAAATCCAACCCTATTCGTATTCTCAAGCAAC
AAACAACTAGATTTGATTGAAACTGTGGCCGCTCATCAAACCAGAAGCAGACGTTCCTCC
GCGACCCGCGGTCAGCGCAAAGTTTACAAAGGACGCTCTGGAAAAAGGAAAAGCCGAAAG
CTCTCTAGAAAGCGTAACAAAACCGACAAATCGCGACGATTGCACAGTAACTCCGACTCC
AACAGGATCGAGGAAAATGTGTACCAGTACGACATGGTATCCACAAATAGTCTTGAATTC
GGAACCCAAATCGGCCAAAAGAAGAAAACAGACTCCCGCGAAACAGACGAAGTAATGATG
TGGAAAAAGGAACAGAGTGAAGTGCGGGTCGTCGCTACGAAGAAAACCACCCATGAATCT
GAAAGCAAAAAGTCACCGGTTAAGCCAAACCCCTTTGGCTTCAGCTTTCGATTCCGTACT
TTGGAGCCCATTGAGCCAACTCATTGCCGTCTTGTGCCTTTTGAGGTAGATTTCGAAAAG
ATCGGATGGGGTTCTTGGATTGTCCATCCCAAAAAATACAACGCCAACCGATGTGTCGGA
CATTGTAGAAACCCCACTGTTCACGGAGCAAAACCAACCAATCACGCTTATTTACAAAGC
ATTCTTTCCAACCAACATGACTCAAACGTGCCTGAGCCATGCTGCGTCCCAACTAAACTG
AAACCAATCAGCCTTCTTTACCTGCAAGACGGAGAAGTTCATCAGCAACAACATCAGGAT
ATGGTTGTAACAGAATGTGGATGTCGATAACTTGCTATGTGGTAGTGTTTATGTTAACGC
TAGTTAAAGTTCCAGCGCATACTAATGAATTTGCATGTTGAGTTCTAACCATATTTGTTT
CATCGCGTTTTGCTTTAATAAATTGTTTACC
| PANTHER |
TGF-beta-rel (IPR015615) - T[109-549] 7.6E-75 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[421-549] 33.937 |
| Gene3D |
Cystine-knot_cytokine (IPR029034) - T[438-549] 3.8E-35 |
| SUPERFAMILY |
Cystine-knot_cytokine (IPR029034) - T[446-549] 6.02E-34 |
| Pfam |
TGF-b_C (IPR001839) - T[448-548] 4.1E-30 |
| SMART |
TGF-b_C (IPR001839) - T[449-549] 2.8E-48 |
| ProSitePatterns |
TGFb_CS (IPR017948) - T[467-482] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NODAL_HUMAN | 55 % | 132 | 3.1E-34 |
| GDF6_HUMAN | 44.118 % | 103 | 1.58E-23 |
| BMP10_HUMAN | 42.718 % | 108 | 1.73E-25 |