- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1702.g15479.01.t
Possible name(s)
DLL1; NOTCH2; SNED1
Gene model
Location
S1702 [21,835 / 29,036]
Amino acid sequence
Length: 973
>Phmamm.CG.MTP2014.S1702.g15479.01.p
MLTVSTAFGQEDPEAPPADPENPEEPPTEDPGPTEPPPPPCEGEFYAPEGSISSPDYPQN
YPNKRNCIYRILTDNIINILISCFIFDVKLYFESFEIEESEDCTYDFLNIVFNATSRDPD
TNRYCGRGLGKVNDGHLRGNGPLIVGFVSDDSDNMKGFKFDFKFELEGPDPCESGPCQNG
GECQTFTGYYKCSCPNGYAGFNCEIDKDECASIPCQNGGECVDELDGYTCECINEFDGTH
CETAPQPCLSDPCQNGGICVDRVTDYVCSCPKDFHGDHCEESIPTPPPPPTTTTTTVATT
TIHPEAPDASTTETPGGDSSDPADSVDPADPEDVGEPGKKDDNLPPADNTDNTADGTGKH
SNSAVIAAIVIIVIIALILAAIFLWYWWKFHKSNDTEEIKAPLDKEVTLINMKTNSEHGE
NKEGKRHSRTTSINSVTMKGNSKSSHDQLLHKLKKMSAGIIMEEVPSEPQRVHAFNSPNH
PQQVMGPTAYPNPNVPHNPHLQQQQQEALSNGTYQAQHAPPDHSALKRISIPVSQNEMSQ
LDKRQLNEPFYASPTKGNYYPAQYVSPDAAVRLFNQMKQTGSPNFDFRNAVSQFGPNDYT
KNPHGSFVPKNPPITTVANVLQPRPPAQFPPHNNPAPFKQTQLPHATVPTQPLPVNPPRN
YDVNQTMELSPEEAAGVVNHILSSKPKNSFVTTQEAMDILDNVRKDLYGKEPPPLNREKS
VFLRPHEVAKMMNSFHKRPRYEDDTEPKNETTSFQSSYGPSDTENRHRKWNRDFRGCTPI
REETGTDKDADDHKHEHEQQHNKPSKIYEPESKEPAKHDRLRKRPKRFPSARTLDPDEKV
HDWLKNSPKFKKAGYKPRRQGSPASTVPTETYTVVTRPMPAKQNEHKTGTKGSPVSNDDG
DKSSAMVQRTIKQTRRVLPDSKPMLPITENKAKSLVEKLIKAPARSNQNVVGPGLTVERE
NAFVGEGAGLDYF
Nucleotide sequence
Length: 2,922
>Phmamm.CG.MTP2014.S1702.g15479.01.t
ATGCTTACAGTGTCCACTGCATTTGGGCAAGAGGACCCCGAAGCACCCCCGGCTGATCCT
GAGAACCCTGAAGAGCCGCCTACTGAGGATCCAGGACCCACGGAACCCCCACCACCACCT
TGTGAGGGTGAGTTTTACGCACCGGAGGGGAGCATCAGTTCACCGGATTACCCACAGAAC
TACCCCAACAAACGTAACTGCATCTACAGAATATTGACTGACAACATTATCAACATATTG
ATATCGTGTTTTATTTTTGATGTTAAGTTGTATTTCGAATCGTTTGAGATCGAGGAAAGC
GAGGACTGCACATACGATTTTCTAAACATTGTCTTTAACGCCACCTCGCGGGACCCAGAT
ACAAATAGATATTGCGGGAGAGGACTTGGCAAGGTGAATGATGGACACTTGCGCGGGAAT
GGTCCACTGATTGTTGGCTTCGTTAGCGATGATTCGGATAACATGAAAGGCTTCAAGTTT
GATTTTAAATTTGAACTAGAAGGTCCAGACCCGTGCGAGTCCGGTCCTTGTCAGAACGGG
GGAGAATGTCAAACGTTCACTGGATATTACAAGTGTTCCTGCCCAAATGGCTACGCAGGA
TTTAATTGCGAAATAGACAAGGATGAGTGCGCATCAATTCCATGCCAGAATGGCGGGGAG
TGTGTCGATGAACTTGATGGCTATACTTGTGAATGTATCAACGAGTTTGACGGAACCCAC
TGCGAAACAGCACCACAACCTTGTCTTTCTGATCCTTGTCAGAACGGTGGGATTTGTGTG
GACAGAGTTACCGATTACGTGTGTTCTTGTCCGAAAGACTTTCATGGCGACCACTGCGAG
GAATCAATTCCCACTCCGCCTCCTCCACCAACCACCACAACCACTACTGTTGCCACGACA
ACAATCCATCCTGAAGCTCCTGATGCATCAACCACTGAAACACCAGGAGGTGATTCGTCT
GATCCTGCTGATTCTGTTGATCCAGCTGATCCCGAAGATGTTGGAGAACCTGGAAAAAAA
GATGACAATCTCCCACCTGCTGACAATACCGACAATACCGCTGATGGAACAGGCAAGCAT
TCCAATTCTGCGGTAATCGCGGCTATCGTGATCATCGTCATTATAGCTCTAATCTTGGCC
GCTATCTTTCTTTGGTATTGGTGGAAGTTTCATAAGAGCAACGACACTGAGGAAATCAAA
GCGCCCCTCGATAAAGAGGTGACACTCATTAACATGAAGACGAACTCCGAACACGGAGAA
AATAAAGAAGGTAAACGTCATTCCCGCACGACATCCATCAACAGTGTGACCATGAAGGGG
AATTCAAAGAGCTCACACGACCAACTTCTTCACAAACTGAAAAAGATGTCCGCTGGTATC
ATAATGGAAGAAGTCCCTTCCGAACCGCAGAGAGTACATGCATTCAACAGTCCAAATCAC
CCTCAACAAGTCATGGGACCCACCGCGTACCCCAACCCAAACGTACCCCACAACCCACAT
CTGCAACAGCAACAACAGGAAGCACTTAGCAACGGCACTTACCAAGCACAACATGCTCCC
CCAGACCATTCAGCACTAAAGAGAATCTCCATTCCTGTATCGCAGAACGAGATGAGTCAA
TTGGACAAGAGGCAGCTCAACGAGCCCTTCTACGCATCACCGACAAAAGGTAATTACTAC
CCAGCACAATATGTATCACCTGATGCAGCGGTTCGCCTCTTTAACCAAATGAAGCAAACT
GGATCTCCAAACTTTGATTTTCGCAACGCTGTTTCGCAATTTGGCCCCAACGACTACACC
AAAAACCCGCACGGCAGTTTTGTTCCAAAAAATCCTCCAATCACAACAGTCGCAAATGTT
CTTCAGCCAAGGCCCCCAGCACAATTTCCTCCACACAACAACCCGGCGCCCTTCAAGCAG
ACTCAACTGCCGCATGCCACTGTTCCCACGCAACCTTTACCGGTCAACCCTCCTAGAAAT
TACGACGTGAATCAAACGATGGAGCTCAGTCCCGAGGAGGCAGCAGGAGTGGTCAATCAT
ATTCTTTCGTCTAAGCCCAAGAATAGCTTTGTGACCACACAGGAAGCCATGGATATCCTT
GACAACGTTCGTAAAGATCTCTATGGGAAAGAACCGCCTCCATTAAACCGTGAAAAAAGT
GTGTTTCTGAGGCCGCACGAGGTAGCAAAAATGATGAACTCTTTCCACAAGCGACCCCGC
TATGAAGATGACACAGAACCGAAAAACGAAACAACAAGCTTTCAAAGCTCTTACGGCCCT
TCTGACACTGAAAACAGACATCGAAAATGGAATCGGGATTTCAGGGGGTGCACCCCGATA
CGAGAAGAAACCGGAACGGATAAGGATGCGGATGATCACAAACATGAACATGAGCAGCAG
CACAACAAACCAAGCAAAATCTACGAACCTGAATCGAAAGAACCAGCAAAACACGATCGA
CTTCGAAAACGCCCGAAACGCTTTCCGTCAGCTCGAACCCTTGATCCTGATGAAAAAGTG
CACGACTGGTTAAAAAACTCTCCGAAATTTAAAAAGGCCGGGTACAAGCCACGTCGCCAG
GGTTCGCCAGCGAGCACTGTCCCCACTGAGACTTACACTGTGGTGACGAGACCAATGCCG
GCAAAGCAAAACGAACATAAAACTGGGACGAAAGGTAGCCCTGTCTCTAATGACGACGGA
GATAAAAGTTCAGCCATGGTTCAGAGAACAATTAAACAAACAAGACGAGTTCTTCCCGAC
AGCAAACCGATGTTGCCTATCACAGAAAACAAAGCCAAGTCTCTTGTTGAAAAACTAATC
AAGGCCCCGGCCAGAAGCAACCAGAATGTGGTTGGACCAGGTTTGACCGTAGAAAGAGAA
AACGCCTTTGTTGGTGAAGGAGCTGGACTTGACTATTTTTAA
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[36-164] 3.9E-21 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[40-163] 1.96E-19 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[41-165] 21.429 |
| SMART |
CUB_dom (IPR000859) - T[41-165] 3.3E-14 |
| Pfam |
CUB_dom (IPR000859) - T[41-162] 6.2E-18 |
| CDD |
CUB_dom (IPR000859) - T[47-164] 2.88355E-14 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[168-204] 19.152 - T[206-242] 21.281 - T[244-280] 19.18 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[170-204] 0.039 - T[206-242] 1.3E-7 - T[248-280] 6.3E-4 |
| SMART |
EGF-like_dom (IPR000742) - T[171-204] 2.9E-4 - T[209-242] 7.6E-6 - T[247-280] 1.6E-7 |
| Pfam |
EGF-like_CS (IPR013032) - T[177-198] 0.056 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[192-203] . - T[192-203] . - T[230-241] . - T[268-279] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[206-230] . |
| Pfam |
EGF-like_dom (IPR000742) - T[210-238] 5.2E-5 - T[248-278] 8.4E-8 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[221-232] . - T[259-270] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NOTC2_HUMAN | 47.368 % | 114 | 1.68E-25 |
| DLL1_HUMAN | 32.301 % | 109 | 2.05E-24 |
| SNED1_HUMAN | 48.76 % | 123 | 1.64E-28 |