Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1691.g15449.01.t

Possible name(s)

LRRC30; LRRD1; MFHAS1

Gene model

Phmamm.CG.MTP2014.S1691.g15449

Location

S1691 [25,502 / 30,115]

Sequences

Amino acid sequence

Length: 476

>Phmamm.CG.MTP2014.S1691.g15449.01.p
MTKAHYTQYELAAPQSQHRGLKLFDLSHNKRRVHFQHSRIPVLSSKLQHEDVNVENKPKE
AIIEYRRLDREGSRIPVYKSEKRPRKVSFEDDEMPLDRLKNADGKRTLKLRGLELCSLPK
ALFQQTNIESLMLSPERRSCLDYKLPFLPKEIGNLRNLRTLVVDTNELSEIPDEVSNLIY
LEALALSNNSLTELPENFSKLEKLASLHLANNRFTEIPQCVCHLNSLGFLDMSDNAIVHV
PPEICNLSGSLHTMLLFMNEIDRLPNEVSRLTEMMSESANGDKSDEKKETVAIQEKMETE
EREEVASKQQVNENKNSSAEKDNGTMKVTENKENSNGDEKKNVEEGKETVLNDEDGADES
EEELPPGLLEQPVEILKDKRERKKVARFTYDDSPAPSAEKKKIEIKEGKGIKLGDHPRVE
FNLNRNKGEDLRIIHKLFFGVFGDTHHCKKNIRNFSGFTFEKDSPEYEKKEDYIGR

Nucleotide sequence

Length: 1,431

>Phmamm.CG.MTP2014.S1691.g15449.01.t
ATGACGAAGGCTCACTATACGCAATACGAGTTAGCCGCGCCACAGAGTCAACATCGCGGA
CTAAAGTTATTTGATTTAAGCCACAACAAGAGACGTGTCCATTTCCAACACAGTCGGATT
CCAGTGCTTTCTAGTAAACTACAACACGAAGATGTAAACGTGGAAAATAAGCCTAAAGAA
GCGATTATTGAATACCGAAGGCTTGACCGCGAAGGGAGTAGGATTCCTGTTTATAAAAGC
GAGAAACGACCCAGAAAAGTTTCATTTGAAGACGACGAGATGCCACTGGATCGATTGAAA
AACGCAGACGGAAAACGAACTCTAAAACTTCGTGGTTTGGAGCTTTGCTCTTTACCCAAA
GCCCTGTTTCAGCAAACTAACATCGAGTCGCTGATGTTAAGTCCAGAACGCAGATCCTGC
CTAGACTACAAGCTGCCTTTTTTGCCGAAAGAAATCGGTAATCTACGCAACCTGCGAACC
CTTGTCGTTGACACAAACGAGCTGAGCGAAATACCGGATGAAGTGTCGAATCTCATCTAC
TTGGAGGCGCTCGCACTTAGTAACAACAGTTTGACAGAACTACCAGAAAACTTTTCTAAA
CTGGAAAAGCTCGCCAGCCTCCATCTCGCCAATAACAGGTTCACAGAAATACCGCAATGC
GTCTGCCATCTGAACAGCCTCGGGTTTCTCGACATGAGCGACAATGCAATAGTTCACGTC
CCTCCAGAGATCTGCAATTTATCTGGGTCGCTACATACTATGCTGCTCTTTATGAACGAA
ATTGACCGACTGCCCAACGAAGTATCGCGTCTCACAGAAATGATGTCGGAAAGTGCAAAT
GGAGATAAATCTGACGAAAAGAAGGAGACAGTGGCAATTCAAGAAAAAATGGAAACAGAA
GAACGGGAAGAAGTGGCTTCCAAACAACAGGTAAATGAAAACAAAAATAGTTCTGCTGAA
AAAGACAATGGAACCATGAAAGTGACTGAAAACAAAGAAAATAGTAACGGTGACGAAAAG
AAAAATGTTGAAGAGGGAAAAGAGACAGTACTTAATGACGAAGATGGTGCTGATGAAAGT
GAAGAAGAATTACCGCCTGGATTACTTGAGCAACCAGTTGAAATTTTAAAAGACAAAAGA
GAAAGGAAAAAAGTGGCAAGGTTTACTTATGACGATAGTCCTGCTCCATCAGCAGAAAAA
AAGAAAATTGAAATAAAGGAAGGAAAGGGAATTAAACTGGGTGACCACCCAAGGGTGGAA
TTTAATCTGAATCGAAACAAAGGGGAGGACTTGAGGATTATTCACAAGCTTTTCTTTGGA
GTTTTTGGTGATACCCATCATTGCAAGAAAAATATCAGAAACTTTTCTGGTTTTACATTT
GAGAAAGATTCCCCAGAATATGAAAAGAAAGAGGACTATATTGGAAGGTAA

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[86-299] 1.1E-33
SMART	Leu-rich_rpt_typical-subtyp (IPR003591) - T[155-177] 7.4 - T[178-200] 8.8 - T[201-223] 8.8 - T[224-247] 3.1
Pfam	Leu-rich_rpt (IPR001611) - T[156-214] 2.2E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LRRD1_HUMAN	31.884 %	92	1.09E-19
MFHA1_HUMAN	29.688 %	84.3	3.5E-17
LRC30_HUMAN	36.923 %	77.8	7.93E-16