- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S166.g04580.01.t
Possible name(s)
CRX; OTX1; OTX2
Gene model
Location
S166 [49,454 / 51,930]
Amino acid sequence
Length: 408
>Phmamm.CG.MTP2014.S166.g04580.01.p
MSYLKSPHYAMNGLGLGHDMNLLHPSVTYPGIQGMHQGAKNMQFGAPPVYSTTRKQRRER
TTFTRAQLDILEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQVQQQQQ
KQKSGNSSSTSSSTSSTNSNNNNKKKSPPTTPTPSTNGPVSSTSPFQQSLQPAQPAAAPN
NHLPLPQASSTSPVPGSPASSSGQSVPSVSSAAMMNGTGATIAHQQSVHGGSIVQNNSTG
NIWSPASVSPGASSDGASHVGGIGYAGVPATSSSPYMAAAAAVAHATHSPYSVSSNAQAA
ATGGYPQNYPPSHSYFGSMEASYLPSVPFHAGGHATGMGDMSMVGQQNAHPGSHHGSMQS
HGAGHHQFMSQSYPYHASTTGGSLNSYSSVSDCVDYKDQTQGWKFQVL
Nucleotide sequence
Length: 1,227
>Phmamm.CG.MTP2014.S166.g04580.01.t
ATGTCGTACTTGAAGTCCCCACACTACGCCATGAACGGCCTTGGTCTGGGACATGATATG
AATCTACTTCACCCATCTGTTACATATCCAGGCATTCAAGGAATGCACCAAGGAGCAAAG
AACATGCAATTCGGAGCACCCCCAGTTTACAGCACAACTCGCAAACAACGTCGCGAACGA
ACAACCTTTACCCGAGCTCAGTTGGACATCTTGGAAGCACTTTTTGGCAAAACCAGATAC
CCAGATATTTTTATGCGCGAAGAAGTTGCATTAAAAATCAATCTGCCAGAATCTCGTGTT
CAGGTTTGGTTCAAAAACCGTCGTGCGAAATGCCGTCAGCAAGTTCAACAACAGCAACAA
AAACAAAAGTCAGGCAATAGCAGCAGCACCAGTTCAAGCACAAGCAGCACCAACAGTAAT
AATAACAACAAAAAGAAAAGTCCACCAACTACCCCGACACCATCGACAAATGGTCCAGTT
AGCAGCACCTCACCTTTCCAACAATCGCTCCAACCAGCGCAACCAGCAGCAGCACCCAAC
AACCACCTTCCCTTGCCGCAAGCATCATCTACTTCGCCTGTACCCGGATCACCAGCGTCA
TCTAGCGGACAATCAGTTCCCTCAGTATCGTCTGCGGCTATGATGAACGGCACAGGAGCA
ACTATTGCTCATCAACAGAGTGTGCACGGCGGCTCGATTGTTCAGAACAACAGCACGGGA
AACATATGGAGTCCTGCTTCTGTTTCACCCGGGGCCAGTAGCGACGGAGCAAGCCACGTT
GGAGGTATTGGATACGCAGGTGTCCCCGCTACCAGTAGCTCCCCTTACATGGCCGCTGCA
GCTGCGGTAGCACACGCCACTCACTCGCCGTACTCTGTGTCCAGCAACGCACAAGCTGCT
GCAACAGGTGGATATCCACAGAACTACCCACCATCCCATTCTTACTTCGGATCGATGGAA
GCGTCGTACTTGCCTTCAGTGCCATTCCACGCCGGCGGACATGCCACAGGTATGGGTGAC
ATGTCCATGGTTGGACAACAAAACGCGCACCCGGGAAGTCACCACGGATCAATGCAATCG
CACGGGGCTGGACACCACCAATTCATGTCTCAGTCATATCCGTACCACGCTAGTACAACA
GGTGGCAGCCTCAATTCCTACTCGTCAGTTTCTGACTGTGTTGACTACAAGGATCAAACC
CAAGGCTGGAAATTCCAGGTCTTGTAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[42-114] 1.8E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[54-114] 19.224 |
| SMART |
Homeobox_dom (IPR001356) - T[56-118] 1.2E-23 |
| CDD |
Homeobox_dom (IPR001356) - T[57-112] 2.20646E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[57-113] 2.1E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[89-112] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OTX2_HUMAN | 69.912 % | 161 | 1.09E-46 |
| OTX1_HUMAN | 70.94 % | 169 | 5.1E-49 |
| CRX_HUMAN | 57.522 % | 132 | 9.67E-36 |