- Region 'REG00000885' >
- Transcript 'KH2012:KH.C4.45.v2.A...' >
- Transcript 'KH2012:KH.C4.213.v1....' >
- Transcript 'Boleac.CG.SB_v3.S2.g...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1645.g15327.01.t
Possible name(s)
TBX2; TBX3; TBX4
Gene model
Location
S1645 [10,252 / 12,939]
Amino acid sequence
Length: 431
>Phmamm.CG.MTP2014.S1645.g15327.01.p
MGSSRSGDTSQSWYSGSLESDHFVSEYLPGLGNDGAIVPVDASHPPDFHQLHARRTQGGG
RASSPIDPNLRVELCDRELWEQFSRVGTEMIVTKSGRRMFPGYRVKLSGLDPNTKYCLLM
DIVNVDQHRYKFQQGEWMVAGRGEPHSPQRLFLHPGSPASGEKWMDDVVSFNKIKLTNSN
VSKAADKIVLNSMHRYQPRVHIIRTDDVTNLPSEMFSTFAFPQTVFITVTAYQNGEVTKL
KIDNNPFAKGFRENGGRAGSKNLNSTRNTTPKSGRNNSNIAGSSNSKEENPKRARAVYET
LHSMEERKQPQPDHKPDQLRNWMTSLESPFPNLGSFPMLYPNVFHPTPFTTLPNPFYPPA
HHVTYNYPNVTRNVTSQNIVSSSPSVTSLSKSNDSVYSMLHATAQKTIESCQSKAHSCVN
AGSFPNPMFLC
Nucleotide sequence
Length: 1,296
>Phmamm.CG.MTP2014.S1645.g15327.01.t
ATGGGTAGTAGCAGATCAGGGGACACATCACAGTCATGGTACAGTGGAAGTTTAGAGTCG
GATCATTTTGTTTCGGAATATTTGCCGGGATTAGGAAATGATGGGGCTATTGTACCGGTT
GATGCGTCACATCCACCTGACTTTCACCAACTTCATGCAAGACGTACACAAGGTGGCGGT
CGAGCGTCGAGTCCTATTGATCCAAATTTGCGAGTGGAATTATGCGACAGGGAATTGTGG
GAACAATTTTCGCGAGTTGGAACTGAAATGATTGTCACCAAATCTGGAAGGCGAATGTTT
CCTGGATATCGAGTAAAACTTTCAGGCTTGGATCCAAACACGAAATATTGTTTGTTAATG
GACATTGTCAACGTCGACCAACACAGATACAAGTTTCAGCAAGGCGAATGGATGGTTGCA
GGTCGGGGAGAACCCCACTCGCCCCAACGTCTTTTTCTTCACCCCGGCAGTCCCGCTAGT
GGTGAAAAGTGGATGGACGACGTTGTGTCGTTCAATAAAATCAAACTTACAAATTCCAAC
GTTTCTAAGGCAGCAGACAAGATTGTGTTAAATTCAATGCATCGTTATCAACCTCGTGTA
CACATTATTCGTACCGATGACGTAACAAATTTACCAAGCGAGATGTTTTCGACTTTTGCC
TTTCCACAAACTGTGTTCATCACTGTGACGGCATATCAGAACGGAGAGGTCACAAAGCTG
AAAATCGACAACAACCCCTTCGCAAAAGGTTTTCGTGAAAATGGAGGACGGGCCGGCAGT
AAAAACTTAAACTCGACCAGAAACACCACTCCAAAATCCGGCAGAAACAATTCAAATATT
GCGGGATCGTCGAACTCTAAAGAAGAAAACCCTAAACGAGCCAGAGCCGTTTACGAAACT
CTACACTCAATGGAGGAACGCAAGCAACCACAGCCAGACCACAAACCCGACCAGTTGCGC
AACTGGATGACGTCACTCGAAAGTCCTTTTCCCAACCTTGGGTCCTTTCCAATGTTATAT
CCTAACGTGTTTCACCCGACACCATTCACAACACTTCCCAATCCATTCTACCCTCCCGCA
CATCACGTGACCTACAATTATCCCAACGTCACGAGAAATGTGACGTCACAAAACATTGTT
TCGTCTTCGCCAAGTGTGACGTCACTATCGAAAAGTAACGATTCTGTTTATTCAATGCTT
CATGCAACAGCGCAGAAAACAATCGAAAGCTGTCAATCAAAAGCGCACTCTTGTGTAAAC
GCTGGTTCTTTTCCTAACCCGATGTTTCTGTGTTGA
| PANTHER |
TF_T-box (IPR001699) - T[33-298] 3.4E-122 |
| Gene3D |
T-box_sf (IPR036960) - T[67-258] 2.9E-86 |
| SMART |
TF_T-box (IPR001699) - T[69-258] 6.2E-112 |
| CDD |
TF_T-box (IPR001699) - T[69-257] 1.46681E-115 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[70-253] 1.62E-73 |
| Pfam |
TF_T-box (IPR001699) - T[72-253] 9.6E-79 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[74-253] 73.602 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[79-98] . |
| PRINTS |
TF_T-box (IPR001699) - T[87-111] 1.4E-41 - T[152-165] 1.4E-41 - T[169-178] 1.4E-41 - T[189-203] 1.4E-41 - T[224-237] 1.4E-41 - T[245-253] 1.4E-41 |
| PRINTS |
TF_Brachyury (IPR002070) - T[132-152] 4.3E-5 - T[194-211] 4.3E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX2_HUMAN | 55.224 % | 248 | 4.2E-75 |
| TBX3_HUMAN | 51.389 % | 239 | 9.56E-72 |
| TBX4_HUMAN | 55.914 % | 233 | 7.26E-71 |