Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1602.g15218.02.t

Possible name(s)

PTPN23; RHPN1; RHPN2

Gene model

Phmamm.CG.MTP2014.S1602.g15218

Location

S1602 [14,917 / 23,987]

Sequences

Amino acid sequence

Length: 522

>Phmamm.CG.MTP2014.S1602.g15218.02.p
MFTKYDCITGVPAVQRSVSLEKASILFNIGALYSQLGTRADRTRRKGINIAIDAFQSSAG
AFDFVRSNFVNAPTTDLSTSVLQSLTLLMLAQAQECVLERKVLGGFEIQLGKCASISQEA
MKVSEKYSAADKAFSLSEVKSYVPYSWINMAQVKRHHYRALAHYYAGLGLLEQHEAAEPL
EISKLLSNLYLNEKYSEDHPKHDDVAQRKEDRRRLGKSHLRQSVFYHERALQTHSLCKML
RTVDILKEYLQHAHNRSVAKFAEVDTEEDFFEIIGAPDIQPYTEYESDMIAPSFSSVPSS
DIFHRLGPVSIFSAHNRLGPVRLVKLSTQEEKCSFTLQGDGPVIVSNLDDVAMQLGIRNN
DVLVAVDDVDAKWSDHDQVANEITEKPSVELKLISVLGSFAPPAISANESMQPNPNRNQN
NNNSNNGAVVRRRQLPNKSREIKKRHSFGIFTGLRLKTKANVSNRFSTISENPAGIQEVG
AGARRPPHSVSVQRSATSAKYVYGQGTVLRPKKDPYSYRSQC

Nucleotide sequence

Length: 1,569

>Phmamm.CG.MTP2014.S1602.g15218.02.t
ATGTTCACCAAGTACGATTGCATTACTGGTGTACCGGCAGTCCAGCGTTCAGTATCATTA
GAAAAAGCGAGTATCCTCTTTAACATCGGAGCCTTGTACTCCCAACTTGGCACCAGGGCT
GACCGCACCCGGCGCAAAGGCATCAATATTGCAATAGACGCCTTTCAAAGTTCGGCGGGT
GCTTTCGATTTTGTGCGTTCTAACTTTGTTAACGCTCCAACCACCGACCTCAGCACTTCG
GTTCTGCAATCCCTTACTCTTCTGATGCTTGCACAAGCTCAAGAGTGTGTCCTGGAACGA
AAAGTGCTTGGAGGATTTGAAATCCAACTGGGAAAATGCGCCTCCATTTCCCAAGAAGCG
ATGAAGGTGTCTGAAAAGTACAGCGCAGCCGACAAAGCCTTCAGTTTAAGTGAAGTGAAA
TCATACGTTCCGTATTCGTGGATCAACATGGCGCAAGTGAAGAGGCACCACTACAGGGCG
CTAGCACACTACTATGCTGGGCTGGGACTGCTTGAGCAACATGAGGCTGCTGAACCACTT
GAAATATCAAAACTTCTTTCCAATCTTTACTTGAATGAGAAATACAGTGAGGATCACCCT
AAGCATGATGATGTGGCTCAGAGGAAAGAGGACAGGAGGAGATTGGGAAAATCGCATCTC
CGCCAGTCTGTGTTCTACCACGAAAGAGCTTTGCAAACACACAGTTTGTGCAAGATGCTG
CGAACTGTCGATATTTTAAAGGAATACTTGCAACACGCACACAACCGATCTGTCGCCAAA
TTTGCTGAAGTTGACACTGAGGAAGACTTTTTTGAGATTATTGGAGCGCCCGACATACAA
CCTTACACTGAATACGAGAGTGACATGATCGCTCCTTCGTTTTCAAGCGTCCCCTCATCC
GATATTTTCCATCGCTTGGGTCCTGTCTCCATATTTTCAGCTCACAACCGACTGGGCCCG
GTTCGCTTAGTAAAACTTTCAACACAGGAAGAAAAATGTTCGTTCACTTTACAAGGGGAT
GGACCAGTTATTGTGAGCAACCTTGACGATGTCGCAATGCAACTTGGCATACGTAATAAT
GACGTACTAGTGGCAGTTGATGACGTGGATGCGAAGTGGAGTGACCATGATCAGGTCGCA
AACGAGATTACTGAAAAACCCAGCGTTGAACTCAAGTTGATTTCAGTCCTCGGTAGTTTT
GCTCCTCCAGCGATATCAGCAAATGAATCGATGCAACCTAATCCGAACAGAAATCAAAAC
AATAATAACTCGAACAATGGTGCAGTTGTGCGCAGACGCCAACTTCCAAATAAATCACGT
GAAATTAAAAAGCGACATTCTTTTGGCATCTTCACCGGACTCCGTTTAAAGACCAAAGCC
AACGTCTCGAACCGGTTTTCGACGATTTCTGAAAATCCTGCGGGAATCCAGGAGGTCGGA
GCCGGCGCGAGAAGGCCCCCGCACTCGGTGTCTGTGCAAAGGAGCGCTACATCTGCTAAG
TACGTTTACGGGCAGGGCACTGTACTAAGACCGAAAAAGGACCCTTACAGTTACCGTTCT
CAGTGCTGA

InterProScan

SMART	BRO1_dom (IPR004328) - T[1-321] 8.7E-59
Gene3D	BRO1_sf (IPR038499) - T[1-256] 1.4E-53
ProSiteProfiles	BRO1_dom (IPR004328) - T[1-309] 31.769
Pfam	BRO1_dom (IPR004328) - T[2-316] 1.1E-57
SUPERFAMILY	PDZ_sf (IPR036034) - T[293-395] 4.13E-7
SMART	PDZ (IPR001478) - T[331-397] 4.8E-4

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RHPN2_HUMAN	40.244 %	297	4.99E-93
RHPN1_HUMAN	34.711 %	269	4.45E-82
RHN2P_HUMAN	35.61 %	238	1.93E-71