Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S156.g04362.03.t

Possible name(s)

SDHB

Location

S156 [32,108 / 37,421]

Sequences

Amino acid sequence

Length: 236

>Phmamm.CG.MTP2014.S156.g04362.03.p
MSGFGISRTVLRKSCQTACLYTQTARCAASAAAVEKEQPRLKTFSVYRWNPEEKGSQPYM
KKYKVDLNERIDTNLSKPTKIYPLPHMYVVKDLVPDMANFYAQYRSIEPFLKQKDVSKAG
VENHQSVEDRQKLDGLYECILCACCSTSCPSYWWNPTKYLGPAVLMQAYRWIIDSRDEYT
AERLDRLNDPFSLYRCHTIMNCTKTCPKGLNPGLAIAELKKMLATHNSSAVAISQK

Nucleotide sequence

Length: 711

>Phmamm.CG.MTP2014.S156.g04362.03.t
ATGTCTGGGTTTGGGATTTCTCGTACAGTGCTGCGAAAATCATGCCAAACAGCCTGTCTT
TACACTCAAACTGCAAGATGTGCTGCCTCAGCAGCTGCTGTCGAAAAAGAGCAACCAAGA
TTGAAAACATTTTCTGTCTATCGCTGGAATCCAGAGGAGAAGGGTTCACAACCATACATG
AAGAAATATAAAGTTGATTTGAATGAACGAATTGATACAAACTTGAGCAAACCGACAAAG
ATATATCCACTCCCTCACATGTATGTGGTTAAGGATCTTGTCCCTGACATGGCAAATTTC
TATGCTCAGTATCGTTCAATCGAACCATTTTTGAAGCAGAAAGATGTTTCCAAAGCGGGT
GTTGAAAACCATCAGTCAGTGGAAGACAGGCAAAAGTTGGATGGTCTGTATGAATGCATT
TTGTGTGCTTGTTGTTCCACATCTTGTCCAAGTTACTGGTGGAATCCAACAAAATATCTC
GGTCCCGCTGTTTTGATGCAGGCATACAGATGGATTATTGACAGTCGTGACGAATACACA
GCAGAAAGATTAGATCGTCTTAATGACCCATTCTCGTTATACAGATGTCATACAATCATG
AACTGCACCAAAACCTGTCCAAAGGGGCTCAATCCAGGTTTGGCTATTGCGGAGTTAAAG
AAAATGCTGGCAACTCACAATTCATCAGCTGTAGCAATCTCCCAGAAATAA

InterProScan

Gene3D
Beta-grasp_dom_sf (IPR012675) - T[30-72] 7.5E-6
TIGRFAM
Succ_DH/fum_Rdtase_Fe-S (IPR004489) - T[79-220] 1.7E-51
Gene3D
Helical_ferredxn (IPR009051) - T[97-232] 3.0E-61
SUPERFAMILY
Helical_ferredxn (IPR009051) - T[98-225] 8.02E-37
ProSiteProfiles
4Fe4S_Fe-S-bd (IPR017896) - T[129-159] 7.634
ProSitePatterns
4Fe4S_Fe_S_CS (IPR017900) - T[139-150] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SDHB_HUMAN 56.226 % 305 3.38E-105