- Transcript 'KH2012:KH.C1.584.v1....' >
- Transcript 'Boleac.CG.SB_v3.S183...' >
- Transcript 'Cisavi.CG.ENS81.R49....' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S154.g04325.01.t
Possible name(s)
LRP1B; SORL1; VLDLR
Gene model
Location
S154 [61,136 / 69,299]
Amino acid sequence
Length: 610
>Phmamm.CG.MTP2014.S154.g04325.01.p
MKSALFLMLLFCANGRLIADFVCNDGKVIPTRHFCDGEPDCDDDSDEIYTNEHCEECTSG
QVRCSNGDCQPRRTVCDGDACNGCQATEEWKNGAGFRCLRNAEMCVLPQEMLHDQIKDCD
NGEDLCFSEIGVFNPAKCFRCLDGSMIINHDTVCDGQIDCSDLSDECLCEVTNLTICDIV
EKQALNASVSNCQVGQFSCDQKCFNRSVICDGTKQCQDAVDERFDFCGGTLKCEDASEEN
AHESCRCGVVDCKSEQGILCNGIAECPSHTGSNLPDDECWNSCLKPDHTYSYECSMTGDT
PNLTEMLQWIYCNYTMVFLDGLSNLTLSKMVTYDQLCDGVIHCPLDYKDESKDRCPDRFR
CRSGDMISIKREKVCDGIIDCDDETDESNITCPERFFCPALGKLKVSIAKKHVCDYQINC
DDATDEANCTDGRFYCESGSPMFVKSKQKFDGKVDCGDWSDECPIHSKLPEGNVFSSRYE
LISNVFLKVAIWIMGILSVFGNLSVIVGEVKTLSRLLSKSDASSSLQANHLLVLNLAMAD
TLMGIYLIILGCADAAYSGVYCKYKLEWLSSQTCVGMGVLVVMSSETSVMTMILLTSFRL
YAIYNVSTCV
Nucleotide sequence
Length: 1,833
>Phmamm.CG.MTP2014.S154.g04325.01.t
ATGAAGTCGGCCCTATTTCTGATGTTACTGTTTTGTGCGAATGGCCGTTTAATTGCTGAT
TTCGTGTGCAACGACGGAAAAGTGATACCGACGCGGCACTTTTGCGATGGCGAACCTGAC
TGTGATGATGATAGCGATGAAATTTACACAAATGAACACTGTGAAGAATGTACAAGTGGT
CAAGTCAGGTGTAGTAATGGAGATTGTCAACCACGTCGAACAGTTTGCGATGGTGATGCT
TGCAACGGTTGCCAGGCAACTGAGGAGTGGAAGAATGGTGCTGGGTTTCGATGTTTGCGT
AATGCTGAAATGTGTGTCTTACCACAAGAAATGCTGCATGATCAAATAAAAGATTGTGAC
AATGGGGAAGACCTCTGCTTTTCAGAGATAGGAGTATTTAATCCTGCAAAATGTTTCCGT
TGTCTTGATGGTTCAATGATCATCAATCATGACACAGTTTGTGATGGCCAAATTGATTGC
TCTGATCTTTCTGATGAATGTTTATGTGAAGTAACTAACCTGACGATATGTGACATAGTA
GAAAAACAAGCCTTAAATGCAAGTGTTTCAAATTGTCAAGTTGGTCAGTTTTCCTGTGAC
CAAAAATGTTTTAATCGTTCTGTGATTTGCGATGGTACAAAGCAATGCCAAGATGCTGTT
GATGAGAGGTTCGATTTTTGTGGAGGTACACTGAAATGTGAGGATGCTTCAGAAGAGAAT
GCACATGAAAGTTGCAGATGTGGTGTCGTTGACTGTAAATCGGAACAAGGAATTTTGTGC
AATGGAATAGCCGAATGTCCTTCTCATACTGGCTCCAACCTGCCGGATGATGAATGTTGG
AACTCCTGTTTAAAACCAGATCACACCTACTCATATGAATGTTCTATGACAGGAGATACT
CCAAACTTGACAGAAATGTTGCAATGGATTTATTGCAATTACACAATGGTTTTTCTTGAT
GGGTTGTCCAATTTGACACTAAGCAAAATGGTGACATACGACCAACTTTGCGATGGTGTC
ATCCACTGTCCTCTTGATTATAAGGATGAGTCGAAGGATCGTTGTCCTGATAGGTTTCGG
TGTAGATCTGGGGATATGATTTCTATTAAACGAGAAAAGGTTTGTGACGGAATTATCGAT
TGTGATGATGAAACGGATGAGAGCAACATTACTTGTCCGGAAAGATTTTTTTGCCCAGCT
TTGGGGAAACTGAAGGTTTCCATTGCAAAGAAGCACGTCTGCGATTACCAGATAAATTGT
GACGATGCAACTGATGAAGCTAACTGCACAGATGGAAGATTTTATTGTGAATCCGGTTCC
CCTATGTTTGTTAAATCAAAACAGAAATTTGATGGCAAAGTTGACTGTGGTGACTGGAGC
GATGAATGTCCCATTCATTCCAAGTTACCTGAAGGAAATGTTTTCTCTTCAAGATACGAA
CTGATCTCGAACGTTTTTCTAAAAGTTGCAATCTGGATTATGGGAATTTTGTCTGTTTTT
GGAAATTTGTCTGTCATCGTTGGAGAAGTGAAAACCCTTTCTCGCTTGCTCAGCAAATCA
GATGCTTCCTCATCCTTACAAGCCAACCATCTTTTAGTTCTGAACCTAGCAATGGCTGAC
ACCCTCATGGGAATTTATCTAATCATTTTGGGTTGTGCTGATGCCGCATACAGCGGAGTT
TATTGCAAATATAAACTCGAGTGGTTGAGCAGCCAAACTTGCGTTGGAATGGGAGTTTTA
GTTGTTATGTCATCTGAAACTTCAGTTATGACGATGATTTTGCTTACCTCTTTCAGACTC
TATGCCATTTACAATGTAAGTACATGTGTATAG
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[11-55] 10.463 - T[118-170] 8.788 - T[191-228] 10.25 - T[354-393] 10.025 - T[391-430] 8.675 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[16-52] 0.0053 - T[132-171] 0.03 - T[191-229] 0.21 - T[354-394] 7.4E-4 - T[428-465] 0.13 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[19-49] 4.06E-7 - T[134-170] 1.31E-5 - T[356-392] 7.59E-6 - T[428-465] 3.27E-5 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[19-54] 1.6E-7 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[21-47] 5.06181E-4 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[26-47] 1.2E-22 - T[67-88] 1.2E-22 - T[201-222] 1.2E-22 - T[366-387] 1.2E-22 - T[405-426] 1.2E-22 - T[441-462] 1.2E-22 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[153-604] 1.3E-40 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[501-610] 9.84 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 27.753 % | 86.3 | 2.44E-17 |