- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S148.g04206.01.t
Possible name(s)
RRP7A
Gene model
Location
S148 [35,909 / 38,148]
Amino acid sequence
Length: 239
>Phmamm.CG.MTP2014.S148.g04206.01.p
MKPNVSVLKVKFDQKCTEGHSLYVKQHNVRKSQNADAEMDSTLMVLNVPPYCDEKCLRRL
FGECGKISSINVQKKPGTIEPKSSEATKFFPEPQVTGFHVAYITYEEKASVAKALKKCEA
NTVHVLSTEGKEIQTGIKKWCLEYVRSWPDSKKLQDEVDKFMSSYDAKVEEEEQKELETE
GVPDDDGWVKVTRRGRNPGFSRTESKEIKIKAKEKRKRKERELLNVYTYQIRESKRESK
Nucleotide sequence
Length: 720
>Phmamm.CG.MTP2014.S148.g04206.01.t
ATGAAGCCTAACGTATCTGTGTTGAAAGTTAAGTTCGATCAGAAATGCACCGAAGGTCAC
TCACTGTATGTGAAACAACACAATGTGCGAAAATCACAAAACGCAGACGCGGAAATGGAT
TCCACGTTGATGGTTCTTAATGTTCCGCCCTATTGTGACGAAAAATGTTTGCGACGCCTG
TTTGGGGAATGTGGAAAAATTTCATCCATCAATGTTCAAAAGAAACCTGGAACCATTGAA
CCTAAATCTTCAGAAGCAACTAAATTTTTTCCAGAACCACAAGTTACTGGGTTTCATGTT
GCATACATAACCTATGAAGAGAAAGCGTCTGTTGCAAAAGCTTTGAAAAAGTGTGAAGCA
AATACTGTACATGTTTTGTCAACTGAAGGAAAAGAAATACAAACAGGAATAAAAAAATGG
TGTTTGGAATATGTAAGATCTTGGCCAGATTCCAAAAAGCTACAGGATGAAGTAGACAAG
TTTATGTCTTCCTATGATGCAAAAGTTGAAGAGGAAGAGCAAAAAGAACTAGAAACTGAA
GGTGTTCCTGATGATGATGGTTGGGTAAAAGTAACAAGAAGAGGTCGTAATCCTGGCTTT
AGTCGCACTGAGAGCAAGGAAATCAAAATCAAAGCAAAAGAAAAGCGAAAACGAAAAGAG
AGGGAATTACTCAATGTGTATACATACCAAATTCGAGAATCAAAACGAGAAAGTAAGTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-139] 2.1E-11 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[33-118] 1.48E-10 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[41-140] 9.149 |
| SMART |
RRM_dom (IPR000504) - T[42-136] 3.2E-7 |
| CDD |
Rrp7A_RRM (IPR034890) - T[42-144] 3.84177E-39 |
| Pfam |
RRM_dom (IPR000504) - T[43-79] 4.4E-5 |
| Pfam |
RRP7 (IPR024326) - T[147-237] 2.0E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RRP7A_HUMAN | 45.064 % | 184 | 1.21E-57 |
| RRP7B_HUMAN | 56.579 % | 75.9 | 8.53E-18 |