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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C1.1025.v2...' > 
  2. Transcript 'Cisavi.CG.ENS81.R219...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  4. Transcript 'Boschl.CG.Botznik201...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1442.g14804.01.t

Possible name(s)

CHRNA1; CHRNA3; CHRNA6

Gene model

Phmamm.CG.MTP2014.S1442.g14804

Location

S1442 [17,003 / 19,631]

Sequences

Amino acid sequence

Length: 171

>Phmamm.CG.MTP2014.S1442.g14804.01.p
GCYKHYIQYACCRGPYVDMTYYFVLQRRPLYLLINILFPTFLFSVLTCAVFYLPSDAGEK
MTLSISLLLSLIVFLLVIVEAIPSTAKGVPLLCQYIVFTMILVCLSIMITVVVINIHYRG
PTTHTMSERVKKIFMVWLPKFALSSTMKKLDPYAEKKLKAAKAPKLCNDIT

Nucleotide sequence

Length: 516

>Phmamm.CG.MTP2014.S1442.g14804.01.t
TGGATGTTACAAACACTACATTCAATATGCGTGTTGCAGGGGGCCTTACGTGGACATGAC
TTACTACTTTGTGCTGCAACGTCGTCCTCTTTATTTGCTCATAAACATCTTATTTCCGAC
TTTCCTCTTCTCCGTTTTAACTTGTGCCGTCTTCTATCTTCCGTCGGACGCTGGTGAAAA
GATGACTCTCAGTATCTCGCTGCTCCTGTCACTCATCGTGTTCTTGCTCGTCATTGTGGA
AGCAATCCCATCGACAGCGAAGGGAGTTCCGCTGTTGTGTCAATACATCGTGTTCACCAT
GATCTTGGTGTGTCTTTCAATTATGATTACAGTAGTGGTGATCAACATACATTACAGGGG
ACCTACAACACATACTATGTCCGAGAGAGTTAAAAAGATTTTTATGGTGTGGCTTCCCAA
GTTTGCACTGAGCTCAACGATGAAGAAACTTGATCCTTACGCTGAGAAGAAACTCAAAGC
GGCTAAAGCTCCTAAACTCTGCAATGATATCACAGG

InterProScan

PANTHER
Neur_channel (IPR006201) - T[2-157] 4.6E-56
SUPERFAMILY
Neuro-gated_channel_TM_sf (IPR036719) - T[29-149] 2.09E-40
Pfam
Neurotrans-gated_channel_TM (IPR006029) - T[37-151] 8.2E-40

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACHA3_HUMAN 57.971 % 156 7.18E-46
ACHA6_HUMAN 57.447 % 157 3.17E-46
ACHA_HUMAN 56.329 % 164 8.48E-49