- Transcript 'Boschl.CG.Botznik201...' >
- EST 'AHC0AAA223YF22_RM1' >
- Transcript 'KH2012:KH.C1.19.v2.A...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S143.g04116.02.t
Possible name(s)
BARX1; NOTO; VAX1
Gene model
Location
S143 [155,430 / 156,922]
Amino acid sequence
Length: 373
>Phmamm.CG.MTP2014.S143.g04116.02.p
GIMNRSPLSGEEEMLPFVPFMKQRSAPSPQFLVNQRNKSSSSDEVSDCSPSVSVLSSESD
SFVRPLSTSWSSGSASPSLSSSDSCTKSKSSPMNQESMDKRRKAKKRSLFTIDAILADDK
PKDVDYKLKRVSEIATERPAKVPRVSSANPVSRGYDFSHSNPASTAVQPNGAMQAYLQQY
FHKMATLAYQSPNGVMPGKFAHSLPTPPITPIGNAWFPVTPSTRVSPVLIPNAAAMNYLT
PMSTHGHHITGHISPPTSLQTPENGCNVSSDTSGEVKNKRNRTVFTAEQLQSLESEFEKQ
HYMVGSERYFLARRLGLNEAQVKVWFQNRRIKWRKQKNQSGGECSSPEVASSQPDKKSHF
QLLQEQAVTATYR
Nucleotide sequence
Length: 1,122
>Phmamm.CG.MTP2014.S143.g04116.02.t
CGGAATAATGAACAGAAGCCCATTGAGCGGCGAGGAAGAAATGCTGCCGTTTGTGCCTTT
TATGAAGCAAAGAAGCGCTCCTTCACCGCAATTTCTTGTAAATCAAAGGAACAAAAGTTC
AAGTTCGGATGAAGTGAGCGATTGCAGTCCCTCGGTTTCTGTACTGTCCAGTGAAAGCGA
TAGTTTTGTGCGTCCTCTATCGACATCTTGGTCCTCTGGATCTGCATCACCAAGTCTATC
TTCCTCCGACTCCTGCACCAAGTCAAAATCAAGTCCAATGAATCAAGAGAGTATGGATAA
GCGAAGAAAAGCGAAGAAACGGTCTCTTTTCACAATCGATGCCATTTTGGCCGACGACAA
ACCAAAAGATGTGGATTACAAACTGAAGCGAGTTTCGGAAATTGCAACTGAACGACCAGC
CAAAGTTCCTCGTGTTTCTTCAGCAAACCCAGTGTCACGTGGCTATGATTTCTCACACAG
TAATCCAGCTTCGACCGCAGTACAACCGAATGGGGCAATGCAAGCCTATCTTCAGCAATA
CTTTCATAAAATGGCAACACTCGCTTACCAATCACCGAATGGTGTGATGCCTGGTAAATT
CGCCCATAGTTTACCTACACCCCCTATAACGCCAATTGGCAACGCATGGTTTCCAGTCAC
ACCTTCAACTCGCGTGTCACCTGTGCTTATTCCAAATGCAGCGGCAATGAACTATCTGAC
TCCAATGTCGACTCACGGGCACCATATTACTGGCCACATTTCACCTCCAACCAGCCTTCA
AACTCCAGAAAACGGGTGCAACGTTTCGTCGGACACAAGTGGCGAAGTCAAAAACAAACG
CAACAGGACAGTTTTTACTGCCGAGCAGCTTCAGAGCTTGGAAAGCGAGTTCGAAAAGCA
ACACTACATGGTTGGATCTGAGCGATACTTCTTGGCACGCCGTCTAGGCCTCAACGAAGC
TCAGGTCAAAGTTTGGTTCCAAAATCGTCGCATCAAATGGCGAAAGCAGAAGAATCAATC
CGGTGGTGAATGTTCATCCCCTGAAGTCGCTTCTTCTCAACCAGACAAGAAGTCACATTT
CCAGCTTCTGCAAGAGCAAGCGGTTACTGCTACTTACCGATG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[260-337] 5.13E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[276-336] 20.844 |
| SMART |
Homeobox_dom (IPR001356) - T[278-340] 9.5E-25 |
| CDD |
Homeobox_dom (IPR001356) - T[279-337] 1.58084E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[279-335] 1.3E-21 |
| PRINTS |
HTH_motif (IPR000047) - T[307-316] 4.0E-5 - T[316-332] 4.0E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[311-334] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VAX1_HUMAN | 60.656 % | 79.3 | 1.59E-16 |
| BARX1_HUMAN | 50 % | 80.1 | 3.03E-17 |
| NOTO_HUMAN | 39.844 % | 79.7 | 4.52E-17 |