- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S143.g04116.01.t
Possible name(s)
BARX1; NOTO; VAX1
Gene model
Location
S143 [155,429 / 156,915]
Amino acid sequence
Length: 371
>Phmamm.CG.MTP2014.S143.g04116.01.p
MNRSPLSGEEEMLPFVPFMKQRSAPSPQFLVNQRNKSSSSDEVSDCSPSVSVLSSESDSF
VRPLSTSWSSGSASPSLSSSDSCTKSKSSPMNQESMDKRRKAKKRSLFTIDAILADDKPK
DVDYKLKRVSEIATERPAKVPRVSSANPVSRGYDFSHSNPASTAVQPNGAMQAYLQQYFH
KMATLAYQSPNGVMPGKFAHSLPTPPITPIGNAWFPVTPSTRVSPVLIPNAAAMNYLTPM
STHGHHITGHISPPTSLQTPENGCNVSSDTSGEVKNKRNRTVFTAEQLQSLESEFEKQHY
MVGSERYFLARRLGLNEAQVKVWFQNRRIKWRKQKNQSGGECSSPEVASSQPDKKSHFQL
LQEQAVTATYR
Nucleotide sequence
Length: 1,116
>Phmamm.CG.MTP2014.S143.g04116.01.t
ATGAACAGAAGCCCATTGAGCGGCGAGGAAGAAATGCTGCCGTTTGTGCCTTTTATGAAG
CAAAGAAGCGCTCCTTCACCGCAATTTCTTGTAAATCAAAGGAACAAAAGTTCAAGTTCG
GATGAAGTGAGCGATTGCAGTCCCTCGGTTTCTGTACTGTCCAGTGAAAGCGATAGTTTT
GTGCGTCCTCTATCGACATCTTGGTCCTCTGGATCTGCATCACCAAGTCTATCTTCCTCC
GACTCCTGCACCAAGTCAAAATCAAGTCCAATGAATCAAGAGAGTATGGATAAGCGAAGA
AAAGCGAAGAAACGGTCTCTTTTCACAATCGATGCCATTTTGGCCGACGACAAACCAAAA
GATGTGGATTACAAACTGAAGCGAGTTTCGGAAATTGCAACTGAACGACCAGCCAAAGTT
CCTCGTGTTTCTTCAGCAAACCCAGTGTCACGTGGCTATGATTTCTCACACAGTAATCCA
GCTTCGACCGCAGTACAACCGAATGGGGCAATGCAAGCCTATCTTCAGCAATACTTTCAT
AAAATGGCAACACTCGCTTACCAATCACCGAATGGTGTGATGCCTGGTAAATTCGCCCAT
AGTTTACCTACACCCCCTATAACGCCAATTGGCAACGCATGGTTTCCAGTCACACCTTCA
ACTCGCGTGTCACCTGTGCTTATTCCAAATGCAGCGGCAATGAACTATCTGACTCCAATG
TCGACTCACGGGCACCATATTACTGGCCACATTTCACCTCCAACCAGCCTTCAAACTCCA
GAAAACGGGTGCAACGTTTCGTCGGACACAAGTGGCGAAGTCAAAAACAAACGCAACAGG
ACAGTTTTTACTGCCGAGCAGCTTCAGAGCTTGGAAAGCGAGTTCGAAAAGCAACACTAC
ATGGTTGGATCTGAGCGATACTTCTTGGCACGCCGTCTAGGCCTCAACGAAGCTCAGGTC
AAAGTTTGGTTCCAAAATCGTCGCATCAAATGGCGAAAGCAGAAGAATCAATCCGGTGGT
GAATGTTCATCCCCTGAAGTCGCTTCTTCTCAACCAGACAAGAAGTCACATTTCCAGCTT
CTGCAAGAGCAAGCGGTTACTGCTACTTACCGATGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[258-335] 5.13E-24 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[274-334] 20.844 |
| SMART |
Homeobox_dom (IPR001356) - T[276-338] 9.5E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[277-333] 1.3E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[277-335] 1.91933E-21 |
| PRINTS |
HTH_motif (IPR000047) - T[305-314] 4.0E-5 - T[314-330] 4.0E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[309-332] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VAX1_HUMAN | 60.656 % | 79.3 | 1.61E-16 |
| BARX1_HUMAN | 50 % | 80.1 | 2.92E-17 |
| NOTO_HUMAN | 39.844 % | 79.7 | 4.15E-17 |