- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1436.g14792.01.t
Possible name(s)
RACK1; UTP15; WDR5B
Gene model
Location
S1436 [26,775 / 32,288]
Amino acid sequence
Length: 256
>Phmamm.CG.MTP2014.S1436.g14792.01.p
MDSDKSLIVWKLTRDENTYGVMSRRLCGHSHFVSDVVISSDGQFALSGSWDGDLRLWNLQ
QGITTRRFFGHTKDVMSVAFSGDNRQIISSSRDRTIKLWNTLGQCKYTIMEDNHTDWVSC
VQFSPNPNTPIIVSCGHDKLVKGCQTQTTLRAKNRFLSKHLYTLSNGESEIHALAFSPNR
YWLCAACGPTIKIWDLEGKALLDELRPELLNLTSKAGQPECLSLAWSPDGQTLFAGYKDN
LIRVWQVSILASQSAQ
Nucleotide sequence
Length: 771
>Phmamm.CG.MTP2014.S1436.g14792.01.t
ATGGATTCAGATAAGTCTCTGATTGTGTGGAAATTGACAAGAGATGAAAACACATATGGA
GTAATGAGCCGAAGACTTTGTGGACACTCCCATTTCGTCTCGGATGTTGTCATATCCTCG
GATGGACAATTTGCCCTTTCAGGCTCTTGGGACGGTGACCTTCGACTATGGAACTTGCAA
CAGGGAATTACAACTCGACGCTTCTTTGGCCACACCAAGGACGTGATGTCGGTTGCATTT
TCTGGTGACAATCGTCAGATCATTTCCTCGTCAAGGGATCGAACCATTAAACTGTGGAAT
ACACTGGGTCAATGCAAGTATACAATTATGGAAGACAACCACACTGATTGGGTATCATGT
GTTCAGTTCTCACCAAACCCAAACACCCCTATCATTGTTTCATGTGGCCATGATAAGCTT
GTAAAGGGGTGTCAAACACAAACAACTTTGAGGGCCAAAAACAGATTTCTAAGCAAGCAC
CTTTACACATTGTCAAATGGAGAAAGTGAAATTCATGCCTTGGCATTTTCACCCAATCGT
TATTGGCTTTGTGCTGCATGTGGTCCAACCATTAAAATATGGGATTTGGAAGGTAAAGCT
CTACTTGATGAACTGCGACCAGAATTGCTCAATTTGACAAGCAAGGCAGGCCAACCAGAG
TGCTTGTCATTGGCTTGGTCGCCAGATGGTCAGACGCTGTTTGCCGGTTACAAGGACAAC
CTTATCCGAGTGTGGCAAGTTTCAATTCTTGCTTCCCAGTCTGCTCAATAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-251] 3.7E-85 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-255] 33.537 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-247] 5.5E-50 |
| SMART |
WD40_repeat (IPR001680) - T[19-58] 7.2E-5 - T[61-100] 7.0E-9 - T[102-145] 0.0034 - T[157-195] 0.03 - T[207-246] 0.0067 |
| Pfam |
WD40_repeat (IPR001680) - T[24-58] 2.8E-6 - T[66-100] 2.0E-7 - T[112-142] 0.028 - T[160-195] 7.0E-5 - T[222-245] 3.3E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[26-67] 13.75 - T[68-100] 14.753 - T[223-248] 10.375 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[45-59] . - T[87-101] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[45-59] 2.2E-6 - T[87-101] 2.2E-6 - T[233-247] 2.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5B_HUMAN | 26.809 % | 82.4 | 2.54E-18 |
| UTP15_HUMAN | 29.524 % | 80.9 | 1.84E-17 |
| RACK1_HUMAN | 61.649 % | 344 | 6.36E-120 |