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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S142.g04100.02.t

Possible name(s)

RPUSD1; RPUSD3; RPUSD4

Gene model

Phmamm.CG.MTP2014.S142.g04100

Location

S142 [206,881 / 211,588]

Sequences

Amino acid sequence

Length: 439

>Phmamm.CG.MTP2014.S142.g04100.02.p
MLQRKTVHIGSSLLRESVKNQSCSISNVVSHPLQNSLRTYLHFCGYKQHPNCGFALKQTK
ILKQFSRTLRTRWQAVSHLDSVLSDDVTDTDDIPPSRKPQDVIQTLSTKSDKFTVGKTRE
SEFQNKKPRKTGMDIAKELRQKKLKSDEPEKDTEENLVKKAVNAIKMTDFTYVEDEAIAK
LIRRHVIYADNKMVIFNKPYGLSVHDGDGISKNVKRVLPMLSKMIYGVSTDIPLSLCHRL
DKNTTGVLVCTADPALESHVKKMFRLNLVTRKMWAILVGIPHPQMGIVNIPIGQAQTTDK
LTSKQFTRMVARPTVSYDKMTGEETARSFSKGQTAITKFRVMDSSRDVSLVEFEPETGAK
HQIRLHAADCLDCPILGDHKYSKMDSLAPQKVPINILNRFKLPPTKTRYIPMHLHQSQIL
IPGASLRGLASRRRMILGR

Nucleotide sequence

Length: 1,320

>Phmamm.CG.MTP2014.S142.g04100.02.t
ATGTTGCAGAGAAAAACTGTTCATATAGGAAGCTCTCTTTTGAGAGAGTCTGTTAAAAAT
CAATCCTGCTCCATTTCAAATGTTGTATCACACCCATTACAAAACAGTTTGAGGACTTAT
TTACACTTCTGTGGTTATAAACAACATCCGAATTGCGGATTTGCATTAAAACAAACTAAA
ATTTTAAAGCAGTTTTCACGAACGTTGCGAACCCGATGGCAGGCTGTGTCACACTTAGAT
TCAGTTTTATCTGATGATGTAACTGACACTGATGACATCCCTCCCAGTCGAAAACCACAA
GATGTCATTCAAACACTTTCCACAAAATCAGACAAATTTACAGTGGGGAAAACAAGAGAA
AGTGAATTTCAAAACAAAAAACCTAGAAAGACTGGAATGGACATTGCAAAGGAACTTAGA
CAAAAGAAATTAAAGTCTGATGAGCCTGAAAAGGACACAGAAGAAAATCTTGTGAAAAAA
GCGGTAAATGCAATAAAAATGACGGACTTCACTTATGTTGAAGATGAAGCCATCGCAAAA
CTTATAAGAAGACATGTTATATATGCTGACAACAAAATGGTTATTTTTAACAAGCCATAT
GGACTATCTGTACATGATGGTGACGGTATATCCAAAAATGTAAAACGAGTGCTTCCAATG
CTGTCCAAGATGATTTACGGAGTCAGCACAGACATCCCATTAAGTCTGTGCCATCGATTG
GACAAAAACACCACTGGGGTTTTGGTCTGTACGGCTGATCCAGCATTGGAAAGCCATGTT
AAGAAAATGTTTCGGTTGAATCTTGTCACAAGAAAGATGTGGGCAATTTTGGTTGGAATT
CCGCACCCACAGATGGGTATTGTTAATATTCCCATTGGCCAAGCACAAACCACTGATAAA
CTCACATCAAAGCAGTTTACACGAATGGTGGCCAGGCCTACAGTAAGTTATGACAAGATG
ACAGGTGAAGAGACAGCAAGATCATTTAGCAAAGGTCAAACTGCCATTACCAAGTTTCGT
GTAATGGATTCCAGCAGAGATGTATCACTTGTGGAATTTGAACCAGAAACAGGTGCAAAG
CATCAGATTCGCCTTCATGCAGCAGACTGCCTAGATTGTCCGATCCTCGGTGACCACAAA
TATTCAAAGATGGATTCACTGGCTCCGCAGAAAGTTCCTATCAATATTTTAAATCGCTTC
AAACTTCCTCCAACCAAAACCCGCTACATCCCTATGCATTTACACCAAAGCCAAATACTT
ATACCAGGAGCCAGTTTGCGCGGTTTGGCATCGCGTAGGAGAATGATACTTGGGAGATAA

InterProScan

SUPERFAMILY
PsdUridine_synth_cat_dom_sf (IPR020103) - T[178-403] 2.08E-38
CDD
PsdUridine_synth_RsuA/RluD (IPR006145) - T[193-421] 3.29719E-39
Pfam
PsdUridine_synth_RsuA/RluD (IPR006145) - T[193-368] 2.1E-24
ProSitePatterns
PsdUridine_synth_RluC/D_CS (IPR006224) - T[237-251] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUSD4_HUMAN 39.519 % 222 1.67E-68