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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1428.g14776.01.t

Possible name(s)

SMG5; SMG6; SMG7

Gene model

Phmamm.CG.MTP2014.S1428.g14776

Location

S1428 [5,231 / 31,672]

Sequences

Amino acid sequence

Length: 985

>Phmamm.CG.MTP2014.S1428.g14776.01.p
WLPCYEQNQNVLINAIYNSKTYTFSELPINKMSSSNNMLPVISLNEKSLQRLCEKYQKLV
SVQKQDEYLGQEKTQEGTRSSSVRLPKYQVYEVGVSRLSSRKLPSLSGEKRSEIHSDTMK
HSKVEKDSIKKDAETKEKKNKTKSNERLRNEEDISDNELQWDGYNPLQSEPESISAGALL
VNHTNQASVNKKQLFDPQNPDIPIYVSATSRKENSPTMAHTSNKTFLNTEKTAPGLYYPA
KESLFGNDNSRGDHITLNTARSLSQSSFFTWSSNQLNSLGETIKTIYPGQESSSSKWLKE
ADQLESTIYFELSSSDFTSRNFVDHMQQLRNKLIEKYRSLILTDIDLSFKHNVDQAMWKN
VFHQVIEKLRQQISSCSEMEMAKLKHLLIAVINEASTVYENLISSLESCYELNLKQMLQS
PTTSRSFTKRVGKRTKLAIICCQKCLICLGDIARYKENVNGTLNYGKARHFYIQARCLEP
KNGRPYNQLAVLAVRTRRRLDAIYYYIRSLATSGTPIITARESLTSLFDDARRKLKYIED
SENQRAGPEKKDQTIACNEFWVFTTGTEETKILETKEKHDRNFHINKSSTSEMLKKFILV
FLNVHGKLFTKIGFDSLETKRNDALNMFKHMINGQSLPIMEMTVLHLCAINFFNVYEQQR
RSEIDQESHTFLLEAVEFSFETISILSAFVTKVVHEKNMICEGNLDPTNCRELSVVLPAL
KVSFDWMYANRDLWYPSPPSRDRARKFNIWDSLAKMCDWLCDDRLQFPINILSSDHPTSC
EVTLPEDEELSGFRPLYHSENDTKFVSSFDLSSESLKERTHHCIRFIFIREFLGYLCGME
EPLLAFKNGSYVVVLQQNPGRSKPLDFSIEDVSELVDEEYQCETLEHESFNKEGNKDISD
LQLMHISLKQEKHYQDKRKHQIQASLSAEDHGLNVEVRPNYLIPDTNCFVDHLNLVQALL
DSNRFVVCIPLVVVAELEGLAFESK

Nucleotide sequence

Length: 2,957

>Phmamm.CG.MTP2014.S1428.g14776.01.t
GTGGTTGCCTTGTTATGAACAGAATCAAAATGTATTAATAAATGCCATCTATAATTCTAA
AACATACACTTTTAGTGAATTACCTATCAACAAAATGAGCAGCAGTAATAATATGTTACC
TGTTATATCTTTAAATGAAAAATCCCTTCAAAGGCTCTGTGAAAAGTATCAGAAGTTAGT
TTCCGTTCAAAAACAGGATGAATATCTTGGACAAGAAAAAACGCAAGAAGGCACAAGAAG
CTCCTCAGTTAGACTGCCAAAATACCAAGTTTATGAGGTAGGAGTATCCAGGTTATCTTC
ACGAAAGTTGCCCAGCCTTTCAGGGGAGAAAAGAAGTGAAATTCATTCAGATACCATGAA
ACATTCCAAAGTTGAAAAAGATTCAATAAAAAAAGATGCGGAAACAAAAGAAAAGAAGAA
CAAAACAAAATCTAATGAAAGATTAAGAAATGAAGAAGATATATCTGATAATGAGCTACA
ATGGGACGGTTATAATCCATTACAATCAGAACCTGAAAGCATTTCTGCTGGTGCATTGCT
TGTTAATCATACTAATCAAGCATCGGTCAATAAAAAGCAGTTGTTTGATCCTCAAAATCC
AGACATTCCAATTTATGTATCAGCCACAAGCAGGAAGGAGAATTCTCCCACAATGGCACA
TACTTCAAATAAAACATTTTTGAACACTGAGAAGACTGCACCAGGATTGTATTACCCGGC
AAAGGAAAGCTTATTTGGCAATGATAATAGCAGAGGAGATCACATAACACTTAACACAGC
CAGGAGTTTGTCGCAGTCCTCCTTCTTTACTTGGTCAAGCAACCAATTAAACAGTTTGGG
CGAGACCATAAAAACAATATATCCAGGTCAAGAAAGCTCAAGTTCAAAATGGTTAAAAGA
AGCTGATCAACTTGAAAGCACTATTTACTTTGAGCTTTCTTCTTCGGATTTTACTTCCAG
AAACTTTGTTGATCACATGCAGCAGTTGCGAAACAAATTGATTGAGAAATACAGGTCACT
TATCTTGACAGACATTGATCTATCATTCAAGCATAATGTTGATCAGGCAATGTGGAAAAA
TGTTTTTCACCAGGTCATTGAAAAATTAAGGCAGCAAATATCTTCTTGCTCTGAAATGGA
AATGGCAAAACTAAAACACCTTTTAATTGCTGTCATTAATGAGGCATCAACAGTGTATGA
AAACCTAATTTCATCTCTGGAAAGTTGTTATGAACTAAATTTAAAACAAATGCTGCAGAG
TCCTACCACATCTCGAAGTTTTACGAAACGAGTTGGAAAGCGGACAAAACTTGCAATAAT
CTGTTGTCAAAAGTGTTTGATCTGTCTTGGTGACATTGCCAGATACAAAGAAAATGTGAA
CGGTACACTCAACTATGGAAAAGCTCGCCATTTCTACATTCAGGCAAGGTGTTTGGAACC
GAAAAATGGAAGACCGTATAATCAGCTTGCTGTTTTAGCTGTTCGTACACGCCGCCGCTT
AGATGCCATTTATTATTACATTCGCAGTCTTGCTACATCTGGGACACCTATAATCACTGC
AAGGGAAAGTTTAACATCCTTGTTTGATGATGCACGTAGGAAGTTAAAATACATTGAAGA
TTCTGAAAACCAAAGAGCAGGACCAGAAAAAAAAGATCAAACAATCGCTTGCAATGAATT
CTGGGTCTTCACTACTGGTACAGAAGAAACAAAAATACTTGAAACCAAAGAAAAACATGA
TCGGAACTTTCATATTAACAAATCTTCAACAAGTGAAATGTTGAAGAAATTTATTTTAGT
TTTCCTAAATGTTCATGGGAAACTGTTCACCAAAATTGGATTTGATTCTTTGGAAACCAA
ACGAAATGATGCTCTGAATATGTTTAAGCATATGATCAATGGACAGTCCCTACCCATTAT
GGAAATGACAGTTTTACATCTCTGTGCTATAAATTTTTTCAATGTGTACGAGCAGCAAAG
GCGCAGTGAAATTGATCAGGAATCACATACATTTTTACTGGAAGCTGTTGAGTTCTCTTT
CGAAACTATTTCAATTTTGTCTGCATTTGTTACAAAAGTGGTGCATGAGAAAAATATGAT
TTGTGAGGGAAATCTTGATCCCACTAATTGTCGGGAGTTGAGTGTGGTCCTACCAGCACT
AAAAGTATCATTTGATTGGATGTATGCCAATCGTGATTTGTGGTATCCGTCCCCACCTTC
TAGAGATCGTGCAAGAAAATTCAACATTTGGGACAGTTTGGCTAAAATGTGTGACTGGCT
CTGTGATGATAGATTACAGTTTCCCATAAACATTTTATCATCTGATCATCCAACTTCTTG
TGAAGTCACCTTGCCTGAAGATGAAGAATTGTCAGGATTTAGACCCCTTTATCATTCTGA
AAATGATACAAAATTTGTGTCAAGTTTTGATCTTTCAAGTGAAAGTTTAAAAGAAAGAAC
TCACCATTGCATTCGATTCATTTTTATTCGAGAGTTTTTGGGGTATTTATGTGGAATGGA
AGAACCCTTGTTAGCTTTTAAAAATGGAAGCTATGTTGTGGTCCTGCAACAAAATCCTGG
AAGAAGCAAGCCATTGGATTTTTCAATTGAAGATGTATCTGAATTGGTTGATGAAGAGTA
CCAGTGTGAGACCTTGGAACATGAATCCTTTAACAAGGAAGGAAACAAAGACATTTCTGA
CTTGCAACTGATGCACATTTCTTTAAAGCAAGAAAAACACTATCAAGATAAAAGAAAACA
CCAGATTCAAGCTTCACTTAGTGCAGAGGATCATGGACTTAATGTTGAAGTGCGACCCAA
CTATTTAATACCAGATACAAACTGTTTTGTTGATCACTTGAACCTGGTCCAAGCATTATT
GGATTCAAACCGATTTGTTGTCTGTATTCCACTTGTAGTTGTTGCAGAGTTGGAAGGTTT
AGCATTTGAAAGCAAGG

InterProScan

Gene3D
TPR-like_helical_dom_sf (IPR011990) - T[292-533] 5.1E-54
SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[319-852] 4.32E-70
Pfam
EST1 (IPR019458) - T[353-460] 9.0E-20
Pfam
DNA/RNA-bd_Est1-type (IPR018834) - T[468-798] 8.0E-44

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMG5_HUMAN 27.468 % 89.4 5.28E-18
SMG7_HUMAN 23.529 % 108 7.43E-24
EST1A_HUMAN 34.184 % 375 1.55E-111