- Molecular Tool 'Mitf>Twist' >
- Transcript 'Mooccu.CG.ELv1_2.S52...' >
- Region 'REG00000396' >
- Molecular Tool 'Hox12mut-MO (Ikuta 2010)' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S140.g04058.01.t
Possible name(s)
AFG3L2; SPG7; YME1L1
Gene model
Location
S140 [193,124 / 197,442]
Amino acid sequence
Length: 487
>Phmamm.CG.MTP2014.S140.g04058.01.p
MSMFKSTTEKAIVSDVTFDDVCGIDEVKDEMKDIVEYLRDPEKFTKLGAKLPKGILFIGP
PGTGKTLLAKAVAGEAGVPFFYASGSEFDELFVGVGALRIRQLFEKARAQSPAIIFIDEI
DACGSKRSNSSRQPYARQTINQLLQEMDGFASKEHIIVMGATNTGEILDKALTRPGRFDQ
KVNIMLPDIKGRKDILNLYIGKLVNVDRIASLTGGMSGADLNNLVNQAALRAAKNSKETV
DQEDLEYALDKIRMGPELKTRIRTEKDLKNTAHHEAGHALVAYYTPAAQNIYKATIRQRG
QALGHVSLMPSAEDEISQSKAQLLAMLDICMGGRIAEEILHGKEKVSTGASSDIQSATVT
AYKLVCQYGMSDKLGLMTYDIDHLSQETKRVVEMEVKNVLETSYEKARKLLTTRSNEHAL
LAEALIRYETLTMDEIKVLLESGDLQKIGTLRQKEERARLKKKLEKSIAIAAPVIDYVPA
APEQAEP
Nucleotide sequence
Length: 1,464
>Phmamm.CG.MTP2014.S140.g04058.01.t
ATGTCGATGTTCAAGTCCACAACGGAAAAAGCAATCGTTAGTGATGTCACATTTGATGAT
GTGTGTGGGATTGATGAAGTTAAGGATGAAATGAAAGACATAGTGGAATACTTGAGAGAC
CCTGAGAAATTTACGAAGCTTGGAGCAAAATTGCCCAAAGGTATTTTGTTTATTGGTCCT
CCTGGCACAGGCAAAACTTTGCTTGCAAAAGCAGTAGCTGGGGAAGCTGGTGTCCCATTT
TTTTATGCATCTGGCTCAGAATTCGATGAACTGTTTGTTGGTGTTGGAGCTCTTCGTATC
AGACAACTCTTTGAAAAGGCACGGGCCCAATCACCTGCAATCATTTTTATTGACGAAATT
GATGCTTGTGGCAGCAAGCGTTCCAACTCATCTAGGCAACCATATGCTCGACAAACTATC
AACCAATTACTTCAAGAAATGGATGGCTTTGCTAGCAAAGAGCACATCATTGTGATGGGT
GCAACCAACACTGGAGAGATATTGGACAAAGCCTTAACTCGACCTGGTCGGTTTGACCAG
AAAGTTAACATCATGTTGCCAGACATCAAAGGACGCAAAGACATCCTCAACTTGTATATT
GGAAAGCTAGTTAACGTTGATCGGATTGCTTCTCTGACTGGTGGTATGTCGGGTGCAGAT
CTCAATAACCTTGTCAATCAAGCTGCCCTCCGTGCTGCCAAAAACAGTAAGGAGACTGTC
GACCAGGAGGACTTGGAATATGCATTGGACAAAATCAGAATGGGTCCGGAATTAAAAACA
AGAATACGAACGGAAAAGGACTTAAAAAACACTGCACACCACGAAGCTGGCCACGCCCTA
GTCGCTTACTACACTCCAGCTGCTCAGAACATATACAAAGCCACAATACGACAACGAGGC
CAGGCACTGGGCCATGTTTCACTGATGCCATCAGCAGAAGACGAGATTTCGCAGTCTAAA
GCGCAACTTTTAGCCATGCTTGATATTTGTATGGGAGGTCGAATAGCTGAAGAAATCCTT
CACGGCAAAGAAAAAGTTAGCACTGGAGCTTCTTCTGACATCCAGTCGGCCACAGTTACT
GCTTACAAGCTTGTGTGTCAGTATGGAATGTCCGACAAGTTGGGACTTATGACGTACGAC
ATCGATCACCTGAGTCAAGAAACAAAGCGAGTTGTCGAAATGGAAGTCAAAAACGTTCTT
GAGACATCATACGAAAAAGCTCGCAAATTGCTCACTACGCGTAGCAATGAGCACGCGCTC
CTCGCCGAAGCCCTCATCCGATACGAGACACTTACTATGGATGAGATCAAGGTGCTCCTC
GAGTCTGGTGACCTGCAAAAGATCGGGACTCTGCGACAGAAGGAAGAACGCGCAAGATTG
AAGAAAAAACTAGAAAAATCGATTGCCATTGCAGCCCCAGTTATTGATTACGTCCCGGCG
GCTCCTGAGCAAGCTGAACCATAG
| TIGRFAM |
FtsH (IPR005936) - T[13-440] 2.7E-158 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[14-252] 6.8E-63 |
| SMART |
AAA+_ATPase (IPR003593) - T[51-188] 2.1E-21 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[55-184] 1.6E-39 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[156-174] . |
| Pfam |
Peptidase_M41 (IPR000642) - T[263-437] 3.5E-49 |
| SUPERFAMILY |
Peptidase_M41-like (IPR037219) - T[263-443] 6.54E-54 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPG7_HUMAN | 38.789 % | 310 | 2.79E-97 |
| AFG32_HUMAN | 40.492 % | 340 | 1.22E-108 |
| YMEL1_HUMAN | 54.667 % | 489 | 8.4E-167 |