- Transcript 'KH2012:KH.C12.200.v1...' >
- Transcript 'KH2012:KH.C9.52.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C12.188.v2...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S140.g04047.02.t
Possible name(s)
CDC40; WDR25; WDR5
Gene model
Location
S140 [81,495 / 86,253]
Amino acid sequence
Length: 619
>Phmamm.CG.MTP2014.S140.g04047.02.p
MEAIASLKNAYADISDGESPGSSDTDEKTVNEEEMLHLKPLPTSKPISLAVVAAAPEVIS
TRDTRGPSVVDHINNKVVTYNPTYEEMHAPEQGPANPFKTRQQLAQKNTLAGYVEEAHFS
AFNFENQRRTFHSYGFAIDPSVDTADPIEKLVVNMTNFDDSDDEEEKDKKENEDTTEEGE
IKEKEEKQGKKKQELEVVMPSDTKTVFEKIKARPQDKRKRVRQNDPEDIEGFCGPWGGYV
DEVKIAKPSEEMQKELDELTSKRKKRGKKPEEKPVEEKTTLHVKDPLDYQGRSYLHIPQD
VGVNLKSDMPPAKCYLPKKLLHTWTGHTKSVSSIKLFPRSGHLLLSTSMDCKVKLWEVYN
KRRLLRTFTGHGKAVREAAFNNDGSRFLTAAYDRFIKLWDTETGKCIKRFSNGKIPYCVK
FNPDQNKQHLFVAGLSDKKIVTWDINSGDAVQEYDRHLGAVNTITFVDNNTKFVSTSDDK
SLRVWEWDIPVDFKYIADPGMHSMPACTLAPNEKWLGCQSLDNKIVIFDVQGRFRQKRKK
VFKGHMVAGYACQLTFSPDMSYVASGDGDGKVCIWDWKTTKMYSKFKAHDSVCIGCTWHP
HETSKLITCGWDGQIKLWD
Nucleotide sequence
Length: 1,860
>Phmamm.CG.MTP2014.S140.g04047.02.t
ATGGAAGCTATTGCTTCGTTAAAAAATGCTTATGCGGATATTTCGGATGGGGAATCGCCA
GGCTCGTCAGATACCGACGAGAAAACGGTTAACGAAGAAGAAATGCTACACCTGAAACCG
TTACCAACAAGTAAACCGATTTCTCTGGCTGTCGTTGCTGCAGCACCTGAAGTCATTTCT
ACGAGAGACACAAGAGGTCCCAGTGTTGTTGATCATATAAACAACAAAGTGGTCACTTAC
AATCCTACTTATGAGGAGATGCATGCACCGGAACAGGGGCCAGCAAACCCATTTAAAACA
AGGCAACAACTGGCTCAGAAAAATACTTTAGCCGGTTATGTGGAAGAAGCACATTTTAGT
GCCTTTAACTTTGAAAACCAGAGAAGGACATTTCATAGCTATGGATTTGCAATCGATCCA
TCAGTAGATACGGCAGATCCGATAGAAAAACTTGTTGTTAATATGACAAACTTTGATGAT
TCTGATGATGAAGAAGAAAAAGACAAAAAAGAAAATGAGGACACAACTGAAGAGGGGGAA
ATAAAAGAAAAGGAAGAAAAACAGGGCAAAAAAAAGCAAGAATTAGAGGTTGTCATGCCA
AGTGACACCAAGACTGTATTTGAGAAAATTAAGGCAAGGCCACAAGATAAACGAAAAAGA
GTGAGACAAAATGATCCCGAGGACATTGAGGGCTTTTGTGGTCCGTGGGGTGGATATGTA
GATGAAGTAAAAATTGCTAAACCATCAGAGGAAATGCAAAAAGAACTTGATGAACTCACA
TCAAAGAGGAAGAAGAGAGGAAAGAAACCTGAAGAAAAACCAGTTGAAGAGAAAACTACA
TTACATGTCAAGGACCCTCTTGATTATCAGGGTCGATCCTATCTGCATATCCCACAAGAT
GTTGGTGTTAATCTGAAATCAGACATGCCTCCTGCGAAATGCTACCTTCCCAAAAAGCTT
CTCCACACCTGGACTGGTCATACAAAATCTGTGTCCTCTATTAAACTTTTTCCAAGGTCT
GGGCATTTACTATTATCCACATCTATGGACTGTAAAGTCAAGTTATGGGAAGTTTACAAC
AAACGACGTTTGCTACGTACGTTTACGGGACATGGAAAGGCTGTTCGTGAAGCTGCATTT
AATAATGATGGAAGCAGATTTCTCACGGCTGCTTACGACCGATTCATAAAACTCTGGGAC
ACAGAAACAGGCAAATGTATCAAGAGATTTTCTAACGGAAAGATACCTTACTGCGTGAAA
TTCAACCCAGACCAAAACAAACAGCATCTATTCGTTGCCGGTCTTTCTGACAAAAAGATT
GTTACGTGGGATATAAATTCCGGTGACGCGGTACAAGAGTACGATCGTCACTTGGGGGCG
GTAAACACAATCACTTTCGTTGACAACAACACCAAGTTCGTGTCTACTTCAGACGATAAA
AGTCTTCGCGTCTGGGAGTGGGACATCCCTGTTGATTTCAAGTACATTGCTGACCCTGGA
ATGCATTCTATGCCAGCCTGCACACTGGCACCCAATGAGAAATGGCTTGGATGTCAGTCG
CTTGACAACAAGATTGTCATATTTGACGTGCAAGGCAGATTCCGCCAGAAGAGAAAGAAA
GTGTTTAAAGGACACATGGTGGCAGGTTACGCCTGTCAGCTGACATTCTCCCCTGACATG
TCCTACGTGGCATCGGGTGACGGCGATGGCAAAGTGTGTATATGGGATTGGAAGACTACG
AAAATGTACAGCAAGTTCAAGGCACACGACAGCGTATGCATCGGCTGCACCTGGCACCCG
CACGAGACCTCTAAGCTTATAACATGTGGCTGGGACGGTCAGATTAAGCTCTGGGATTGA
| PANTHER |
PRPF17 (IPR032847) - T[18-619] 6.8E-256 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[302-619] 8.2E-96 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[315-619] 3.85E-70 |
| SMART |
WD40_repeat (IPR001680) - T[317-357] 1.4E-7 - T[361-400] 4.2E-8 - T[403-444] 0.088 - T[447-486] 3.0E-5 - T[535-576] 1.4E-5 - T[579-619] 4.5E-7 |
| Pfam |
WD40_repeat (IPR001680) - T[319-356] 3.4E-6 - T[363-400] 2.0E-5 - T[451-485] 0.017 - T[540-576] 8.3E-5 - T[585-619] 0.0019 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[324-366] 11.611 - T[368-409] 15.321 - T[454-486] 11.879 - T[554-585] 10.308 - T[586-619] 11.21 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[324-619] 42.712 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[344-358] 8.8E-5 - T[387-401] 8.8E-5 - T[606-619] 8.8E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[344-358] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.605 % | 134 | 1.2E-34 |
| WDR25_HUMAN | 28.662 % | 152 | 1.67E-39 |
| PRP17_HUMAN | 62.521 % | 758 | 0 |