- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S140.g04047.01.t
Possible name(s)
CDC40; WDR25; WDR5
Gene model
Location
S140 [81,425 / 84,746]
Amino acid sequence
Length: 462
>Phmamm.CG.MTP2014.S140.g04047.01.p
DNNTLRLFVCFEFNLIKQRHLCEMEAIASLKNAYADISDGESPGSSDTDEKTVNEEEMLH
LKPLPTSKPISLAVVAAAPEVISTRDTRGPSVVDHINNKVVTYNPTYEEMHAPEQGPANP
FKTRQQLAQKNTLAGYVEEAHFSAFNFENQRRTFHSYGFAIDPSVDTADPIEKLVVNMTN
FDDSDDEEEKDKKENEDTTEEGEIKEKEEKQGKKKQELEVVMPSDTKTVFEKIKARPQDK
RKRVRQNDPEDIEGFCGPWGGYVDEVKIAKPSEEMQKELDELTSKRKKRGKKPEEKPVEE
KTTLHVKDPLDYQGRSYLHIPQDVGVNLKSDMPPAKCYLPKKLLHTWTGHTKSVSSIKLF
PRSGHLLLSTSMDCKVKLWEVYNKRRLLRTFTGHGKAVREAAFNNDGSRFLTAAYDRFIK
LWDTETGKCIKRFSNGKIPYCVKFNPDQNKQHLFVAGLSDKK
Nucleotide sequence
Length: 1,388
>Phmamm.CG.MTP2014.S140.g04047.01.t
CGACAACAATACATTGCGTTTGTTTGTCTGTTTTGAATTTAACTTAATAAAACAACGTCA
TTTGTGCGAAATGGAAGCTATTGCTTCGTTAAAAAATGCTTATGCGGATATTTCGGATGG
GGAATCGCCAGGCTCGTCAGATACCGACGAGAAAACGGTTAACGAAGAAGAAATGCTACA
CCTGAAACCGTTACCAACAAGTAAACCGATTTCTCTGGCTGTCGTTGCTGCAGCACCTGA
AGTCATTTCTACGAGAGACACAAGAGGTCCCAGTGTTGTTGATCATATAAACAACAAAGT
GGTCACTTACAATCCTACTTATGAGGAGATGCATGCACCGGAACAGGGGCCAGCAAACCC
ATTTAAAACAAGGCAACAACTGGCTCAGAAAAATACTTTAGCCGGTTATGTGGAAGAAGC
ACATTTTAGTGCCTTTAACTTTGAAAACCAGAGAAGGACATTTCATAGCTATGGATTTGC
AATCGATCCATCAGTAGATACGGCAGATCCGATAGAAAAACTTGTTGTTAATATGACAAA
CTTTGATGATTCTGATGATGAAGAAGAAAAAGACAAAAAAGAAAATGAGGACACAACTGA
AGAGGGGGAAATAAAAGAAAAGGAAGAAAAACAGGGCAAAAAAAAGCAAGAATTAGAGGT
TGTCATGCCAAGTGACACCAAGACTGTATTTGAGAAAATTAAGGCAAGGCCACAAGATAA
ACGAAAAAGAGTGAGACAAAATGATCCCGAGGACATTGAGGGCTTTTGTGGTCCGTGGGG
TGGATATGTAGATGAAGTAAAAATTGCTAAACCATCAGAGGAAATGCAAAAAGAACTTGA
TGAACTCACATCAAAGAGGAAGAAGAGAGGAAAGAAACCTGAAGAAAAACCAGTTGAAGA
GAAAACTACATTACATGTCAAGGACCCTCTTGATTATCAGGGTCGATCCTATCTGCATAT
CCCACAAGATGTTGGTGTTAATCTGAAATCAGACATGCCTCCTGCGAAATGCTACCTTCC
CAAAAAGCTTCTCCACACCTGGACTGGTCATACAAAATCTGTGTCCTCTATTAAACTTTT
TCCAAGGTCTGGGCATTTACTATTATCCACATCTATGGACTGTAAAGTCAAGTTATGGGA
AGTTTACAACAAACGACGTTTGCTACGTACGTTTACGGGACATGGAAAGGCTGTTCGTGA
AGCTGCATTTAATAATGATGGAAGCAGATTTCTCACGGCTGCTTACGACCGATTCATAAA
ACTCTGGGACACAGAAACAGGCAAATGTATCAAGAGATTTTCTAACGGAAAGATACCTTA
CTGCGTGAAATTCAACCCAGACCAAAACAAACAGCATCTATTCGTTGCCGGTCTTTCTGA
CAAAAAGA
| PANTHER |
PRPF17 (IPR032847) - T[41-213] 7.8E-138 - T[223-462] 7.8E-138 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[325-462] 1.2E-40 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[339-457] 1.31E-28 |
| SMART |
WD40_repeat (IPR001680) - T[340-380] 1.4E-7 - T[384-423] 4.2E-8 - T[426-462] 470.0 |
| Pfam |
WD40_repeat (IPR001680) - T[342-379] 2.3E-6 - T[386-423] 1.4E-5 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[347-432] 21.542 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[347-389] 11.611 - T[391-432] 15.321 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[367-381] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 35.294 % | 77.8 | 8.97E-16 |
| PRP17_HUMAN | 55.037 % | 441 | 9.64E-151 |