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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1396.g14682.01.t

Possible name(s)

COL5A1; ITLN1; ITLN2

Location

S1396 [6,404 / 12,046]

Sequences

Amino acid sequence

Length: 401

>Phmamm.CG.MTP2014.S1396.g14682.01.p
MNQSNVRSDAGTYETIEFKNRHARHATGSTRQPVNVTLPSTDKGLKPSSKKLFHVVIVLV
CTVAILAASGLIFEIFNFTRDGKIAKSPLGTFPNPARSCVELRDAGFKDGFYVIQPSLTP
FEKMAKSPLGTFPNPARSCAELRDAGFKDGFYVIQPSLTPFEAYCDMIAAGGGWILAATV
NDNNFNMTEAYGGSWFLMSSNNQDNVLDFFPDVNSTLDRLEARSSELTYLITDFYFYVYD
SHNTFLYEKELFGSSYGMGMWKSSGRPIIDVEHDINSEDYYFEWFIKESVSNILFGYSMT
SRRDGKLIPETEITAFTQKILEIVSESEQLCEYCVCVTAELSPTCFYDDEVLSVPVQFSI
GNDSVVNSMLPPSVKPLPTGFIQFRAYGRTGSVYAMCPAVK

Nucleotide sequence

Length: 1,206

>Phmamm.CG.MTP2014.S1396.g14682.01.t
ATGAATCAATCGAATGTAAGGAGTGATGCAGGCACTTATGAAACAATCGAGTTTAAAAAT
AGACATGCTCGACATGCTACGGGGAGTACAAGGCAACCAGTAAACGTTACGCTGCCATCG
ACTGACAAAGGTCTAAAACCATCATCAAAAAAGTTGTTCCATGTTGTTATTGTCTTGGTG
TGTACGGTTGCAATCCTGGCTGCTTCGGGACTGATTTTCGAGATATTCAACTTTACAAGG
GACGGGAAAATAGCAAAATCACCACTTGGTACTTTCCCCAATCCTGCCCGTTCATGTGTT
GAACTGAGAGATGCTGGGTTTAAAGATGGATTCTACGTCATACAACCGTCACTAACACCG
TTTGAGAAAATGGCAAAATCGCCACTTGGTACTTTCCCCAATCCTGCCCGTTCATGTGCT
GAACTGAGAGATGCTGGGTTTAAAGATGGATTCTACGTCATACAACCGTCACTAACACCG
TTTGAGGCTTATTGTGACATGATAGCTGCTGGTGGTGGATGGATTCTCGCGGCCACAGTT
AACGACAATAATTTCAACATGACAGAAGCTTATGGTGGATCGTGGTTCCTTATGTCGTCA
AACAATCAAGATAATGTGTTAGACTTTTTTCCCGATGTAAATTCAACGTTGGATCGACTT
GAGGCAAGATCCTCAGAACTCACGTACCTGATTACTGATTTCTACTTTTACGTTTATGAT
TCCCATAATACTTTCCTGTATGAGAAGGAGTTGTTCGGTAGCAGTTATGGAATGGGGATG
TGGAAATCATCTGGTAGACCAATTATAGATGTTGAACACGATATTAATTCCGAAGACTAT
TATTTTGAGTGGTTCATTAAAGAATCCGTATCGAACATACTTTTTGGTTACTCAATGACA
TCGAGGAGAGATGGGAAATTGATACCCGAAACAGAGATCACTGCTTTTACTCAAAAAATA
TTGGAAATTGTCTCGGAATCAGAACAGTTGTGTGAGTATTGTGTTTGCGTAACTGCGGAA
TTAAGTCCAACTTGCTTTTATGATGATGAAGTACTTTCAGTACCAGTTCAATTTTCCATC
GGAAACGATTCAGTGGTTAACTCGATGCTGCCACCAAGTGTTAAACCTCTACCGACAGGT
TTTATTCAGTTTCGAGCTTATGGAAGAACTGGTAGCGTCTATGCAATGTGTCCAGCCGTT
AAGTGA

InterProScan

Gene3D
Fibrinogen_a/b/g_C_1 (IPR014716) - T[114-191] 2.9E-6
SUPERFAMILY
Fibrinogen-like_C (IPR036056) - T[128-191] 6.73E-10
ProSiteProfiles
Fibrinogen_a/b/g_C_dom (IPR002181) - T[130-176] 11.895
Pfam
Fibrinogen_a/b/g_C_dom (IPR002181) - T[137-189] 3.9E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value