Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1385.g14656.02.t

Possible name(s)

SRSF4; SRSF5; SRSF6

Gene model

Phmamm.CG.MTP2014.S1385.g14656

Location

S1385 [3,916 / 4,780]

Sequences

Amino acid sequence

Length: 287

>Phmamm.CG.MTP2014.S1385.g14656.02.p
MSGCRIFLGGLSNRATEGDVERFFDGFGKIREVNLKQGYGFVEFDDHRDADDAVYEMNNQ
TLAGSRVTVEHAKGTPRRGGGGGGGGSFGGGRRDNYGGGGGGGYGGRDRGGYGGRDRGGG
GYGDRYGRDDRGGGGRSFGGRYAPPSRTKYRVIVENLSSRVTWQDLKDYLRGAGGEVTYA
EANQKTRNEGVVDFASYDDMKNAISKLDDTELCGRKIRLYEEKRSPSRSRSRSPIRSRSR
DRSRRDSNRSRSPSPRHSRSPDPAEKSRDMSKSPDRSRSYSKSPARD

Nucleotide sequence

Length: 864

>Phmamm.CG.MTP2014.S1385.g14656.02.t
ATGTCTGGATGCAGAATTTTTTTGGGTGGTTTAAGCAATCGTGCTACAGAAGGAGATGTG
GAACGCTTCTTTGATGGTTTTGGCAAGATCAGGGAGGTCAACTTAAAGCAAGGATATGGC
TTTGTGGAATTCGATGATCATCGAGATGCTGATGATGCTGTGTATGAAATGAACAATCAA
ACACTTGCTGGCAGTCGTGTGACTGTTGAGCATGCTAAAGGTACCCCTAGAAGAGGTGGG
GGAGGAGGTGGTGGTGGTAGTTTTGGAGGTGGACGAAGGGACAACTATGGAGGTGGTGGG
GGAGGCGGTTATGGTGGCCGCGACCGAGGTGGTTATGGAGGTCGTGATAGAGGCGGTGGT
GGTTATGGTGACCGGTATGGCAGAGATGATCGAGGCGGTGGTGGTCGCTCATTTGGAGGC
AGATATGCTCCACCTTCGCGTACAAAATATCGGGTGATTGTTGAGAATCTTTCCTCTCGT
GTCACATGGCAAGATCTCAAAGATTACTTACGAGGTGCAGGTGGTGAAGTCACTTATGCA
GAGGCCAACCAGAAAACTCGCAACGAAGGTGTGGTGGATTTTGCCTCTTATGATGATATG
AAAAATGCCATTTCCAAACTTGATGACACTGAGCTTTGTGGTCGCAAAATTCGCTTGTAT
GAGGAAAAACGATCTCCGAGTCGGTCCAGGTCCAGAAGTCCAATTCGATCCCGATCAAGA
GATAGATCTCGCCGTGACAGCAATCGTAGTCGATCACCATCTCCAAGACATTCAAGATCC
CCAGATCCAGCTGAAAAATCTCGTGATATGTCCAAAAGTCCAGACCGCAGTCGTTCCTAC
AGCAAGAGTCCTGCCAGGGATTAA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-80] 4.0E-21 - T[149-223] 3.3E-21
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[3-219] 8.15E-33
ProSiteProfiles	RRM_dom (IPR000504) - T[4-74] 16.79 - T[150-224] 12.134
CDD	RRM1_SRSF4-like (IPR035585) - T[5-74] 9.08665E-34
SMART	RRM_dom (IPR000504) - T[5-70] 4.3E-17 - T[151-220] 3.6E-10
Pfam	RRM_dom (IPR000504) - T[6-67] 3.9E-15 - T[152-218] 4.6E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF4_HUMAN	53.881 %	208	5.22E-64
SRSF6_HUMAN	49.315 %	183	8.85E-56
SRSF5_HUMAN	48.869 %	181	3.93E-56