- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S131.g03866.01.t
Possible name(s)
DDX1; DDX17; DDX50
Gene model
Location
S131 [68,633 / 77,708]
Amino acid sequence
Length: 689
>Phmamm.CG.MTP2014.S131.g03866.01.p
MAAFENLGVMPEISKVVTEMGWNLPTDIQVESIPLILGGGDVLMAAETGSGKTAAFSIPV
IQIVHESYASKGNSAKIQSAGPTFTKWQMNPFDRGSSFAIASDGLLCQCREFKDWHGCRS
SKGVTSGKYYYEALCKDEGLNRVGWSTSTADLNLGTDKQGYGFGGTGKKSNNRQFDTYGE
PFTMHDTVGCYLDMDTGKIKYSKNGVDLGHAFDIPAHLRKQAMYAACVLKNAEIQYNFGA
EAFKYPPSDGYVALAKAPVNCSVNSSATGGKCVAKQSRKDPNSPYAIIIEPSRELAEQTA
NIIKLLKKNISKPELFEVLVVGGVPASEQLKQIERGVDILIGTPGRIDDFISTRKIDLNQ
VRFLVLDECDGLLSAGNGDFIKRMHTRIPQTSSDGRRLQVIVCSATLHSFDVKKLAEKIM
HFPIWVDLKGEDSVPDTVHHVVVPIDPVSDPSWMGLRKHVNTDGVHKQDYIKKDGKEKWS
EGVKILKGEYCVRAIREHNMDQSIIFCRTKLDCDNMEQYFKDMGGGPNHPSHPLSCVCLH
SDRKPPERRSNLERFKKAEVRHLICTDVAARGIDVRGVPFVINVTLPDDKQNYVHRIGRV
GRAERMGLAISLVATKHNEKVWYHSNCNTRGRGCYNTELTDRGGCCIWYNEGRLLGDIED
HLKITIEQTTPKMEIPVNEFDGKVGAEKS
Nucleotide sequence
Length: 2,070
>Phmamm.CG.MTP2014.S131.g03866.01.t
ATGGCGGCATTTGAAAATCTTGGGGTAATGCCTGAAATCAGCAAAGTTGTAACAGAAATG
GGCTGGAACTTGCCCACCGATATCCAGGTAGAGTCGATTCCACTGATTTTGGGCGGCGGA
GATGTTTTAATGGCAGCAGAAACTGGATCAGGAAAAACAGCTGCCTTCAGTATTCCTGTA
ATACAAATTGTCCATGAATCTTATGCTAGCAAGGGAAACTCTGCAAAAATTCAATCAGCA
GGACCAACTTTCACAAAATGGCAAATGAATCCGTTTGACAGAGGCTCTTCATTTGCTATT
GCATCTGATGGTTTGTTGTGTCAGTGTCGAGAATTCAAAGATTGGCATGGTTGTCGTTCA
TCGAAGGGTGTGACATCGGGAAAATATTACTATGAGGCTCTATGTAAAGACGAGGGTCTG
AATCGAGTTGGTTGGTCGACATCCACTGCTGATCTGAATCTTGGTACTGACAAGCAAGGT
TATGGTTTTGGTGGAACTGGAAAGAAATCAAACAATCGGCAATTTGATACTTATGGGGAG
CCTTTCACAATGCATGATACTGTAGGATGCTATTTAGACATGGATACTGGAAAAATCAAA
TACTCAAAAAACGGAGTGGATTTGGGTCATGCATTTGATATTCCTGCTCACTTGAGAAAA
CAAGCGATGTATGCTGCATGTGTTCTTAAAAATGCTGAGATCCAGTACAATTTTGGAGCA
GAAGCATTCAAATATCCACCGAGCGACGGTTATGTGGCACTTGCAAAAGCTCCAGTGAAT
TGTTCTGTGAATAGTTCAGCAACTGGAGGCAAATGTGTTGCAAAACAAAGCAGAAAGGAT
CCAAACTCTCCGTACGCGATCATCATCGAACCATCGCGTGAACTGGCAGAACAAACTGCA
AACATCATCAAATTACTGAAGAAGAATATTTCGAAACCGGAGTTGTTTGAAGTTCTTGTA
GTTGGGGGAGTCCCTGCTTCTGAACAGTTGAAACAAATTGAACGGGGAGTTGATATTTTA
ATCGGAACCCCTGGCAGAATTGATGACTTTATTTCGACAAGAAAGATTGATTTGAACCAG
GTTCGATTTCTTGTACTTGACGAATGCGATGGATTGCTCTCAGCTGGTAACGGGGATTTT
ATTAAACGAATGCACACAAGAATTCCACAGACAAGCAGTGATGGTCGACGTCTGCAAGTT
ATCGTTTGTTCTGCAACTCTGCACAGTTTCGATGTGAAAAAGCTTGCTGAAAAAATTATG
CATTTCCCTATCTGGGTGGATTTGAAGGGTGAGGATTCGGTCCCTGATACTGTTCATCAC
GTTGTGGTTCCAATTGACCCCGTAAGTGACCCCAGTTGGATGGGACTTCGTAAGCACGTC
AACACAGATGGGGTGCATAAACAGGATTATATCAAGAAAGATGGCAAGGAAAAGTGGTCG
GAAGGAGTTAAAATATTGAAAGGCGAATACTGTGTTCGTGCAATCCGCGAACATAACATG
GATCAATCGATTATTTTCTGTCGCACCAAACTCGATTGTGACAACATGGAGCAATACTTT
AAAGATATGGGGGGCGGCCCCAATCACCCGAGTCACCCACTGTCATGTGTGTGTCTCCAT
AGCGACCGGAAACCCCCGGAACGTCGCAGCAACTTGGAGCGATTCAAAAAGGCAGAAGTA
CGTCATCTGATCTGCACTGACGTGGCAGCACGTGGCATCGACGTCAGAGGAGTGCCTTTC
GTCATCAATGTGACGTTGCCTGACGACAAACAGAATTACGTACACAGGATAGGGAGAGTT
GGCCGAGCTGAAAGAATGGGACTCGCAATTTCACTGGTTGCGACCAAACACAATGAGAAG
GTTTGGTACCACAGCAATTGTAACACTAGAGGTCGTGGTTGTTATAACACGGAATTAACG
GATCGAGGAGGGTGCTGTATTTGGTACAATGAAGGCCGCTTGCTGGGCGACATTGAAGAT
CATCTAAAAATCACAATTGAGCAAACTACACCGAAAATGGAAATCCCAGTAAACGAGTTT
GATGGAAAGGTTGGTGCAGAGAAGTCTTAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[2-30] 9.186 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[3-67] 2.35E-15 - T[283-621] 3.52E-53 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[21-441] 4.5E-46 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[26-415] 5.7E-62 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[33-72] 7.051 - T[281-425] 18.456 |
| ProSiteProfiles |
B30.2/SPRY (IPR001870) - T[67-243] 16.328 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[83-246] 2.26E-36 |
| SMART |
SPRY_dom (IPR003877) - T[126-242] 1.3E-23 |
| Pfam |
SPRY_dom (IPR003877) - T[128-239] 2.8E-18 |
| CDD |
Helicase_C (IPR001650) - T[483-612] 4.88313E-28 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[487-678] 17.769 |
| Pfam |
Helicase_C (IPR001650) - T[489-603] 6.8E-23 |
| SMART |
Helicase_C (IPR001650) - T[514-604] 6.6E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX1_HUMAN | 67.004 % | 916 | 0 |
| DDX17_HUMAN | 28.701 % | 130 | 1.42E-31 |
| DDX50_HUMAN | 28.895 % | 130 | 2.16E-31 |